@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2586: (2016-04-05 )
MGAKVSVQINGVARDVVEGTRMLDYLNAEGIQHPHICYSEQIGPIQSCDTCMCEVDGELMRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFMTGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEASMRETRTKKTKTVCTFCGVGCTFEVWTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWEDAIHLVATKLREIQAKYGNDSLGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQAPASDGLTRTVGIGADSGTVEDIESAGLVIIVGASPADGHPVLASRIKRAQKTRGQKLIVSDLRKHEMAERSDLFIHPKQGTDFVWLTAVAKYMIDQGWHDEVFMENRISNVADYLAFLEPFTLEYAEKETGLSVETLKKVAQMVHEADGTAVCWGMGVTQNIAGSHTSSAIANLLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGVSISSEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVFLSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVARACGRTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFNFPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVEVSHELAKERDLESGSLVRLSSPYGRIKLRAVVTDRMKGNEVYVPMHSVSSETAVNLLTSSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDYQPISKVNCACGGNCGCGGKGRNH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SF4_A_3(3O5A)
NAPA_CUPNH
[Raw transfer]




SF4_A_3(3ML1)
NAPA_CUPNH
[Raw transfer]




10 PsiBlast_PDB 92.5726% -66 - C- -1OGY - NAPA_RHOS4 -
9 PsiBlast_PDB 91.8925% -48 - C1 -2NYA - NAPA_ECOLI -
5 PsiBlast_PDB 91.7928% -55 - C1 -2V45 - NAPA_DESDA -
7 PsiBlast_PDB 91.7328% -53 - C1 -2JIQ - NAPA_DESDA -
4 PsiBlast_PDB 91.6028% -55 - C1 -2JIR - NAPA_DESDA -
1 PsiBlast_PDB 91.3628% -56 - C1 -2NAP - NAPA_DESDA -
8 PsiBlast_PDB 90.8528% -54 - C1 -2V3V - NAPA_DESDA -
2 PsiBlast_PDB 90.8028% -52 - C1 -2JIM - NAPA_DESDA -
3 PsiBlast_PDB 90.7428% -55 - C1 -2JIP - NAPA_DESDA -
6 PsiBlast_PDB 90.6028% -53 - C1 -2JIO - NAPA_DESDA -
51 HHSearch 90.4428% -52 - C1 -2NAP - NAPA_DESDA -
54 HHSearch 90.4226% -46 - C1 -3ML1 - NAPA_CUPNH -
12 PsiBlast_PDB 86.3825% -49 - C1 -3O5A 4.1 NAPA_CUPNH
11 PsiBlast_PDB 85.8725% -47 - C1 -3ML1 3.9 NAPA_CUPNH
58 HHSearch 82.5521% -48 - C1 -1G8K - AIOA_ALCFA -
17 PsiBlast_PDB 78.1723% -46 - C1 -4AAY - ? -
14 PsiBlast_PDB 77.4123% -39 - C1 -2VPX - ? -
15 PsiBlast_PDB 77.0323% -38 - C1 -2VPY - ? -
13 PsiBlast_PDB 76.9923% -38 - C1 -2VPW - ? -
16 PsiBlast_PDB 76.9223% -38 - C1 -2VPZ - ? -