@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2642: (2016-04-05 )
VIRFFKIVTPILLSISLVACSSASGKTEKITAPIEKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKTSHEELAKKLTQVEKNGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTDFSKIYGDFGYEDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGAMDFSLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTMGLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DA_A_11(1II7)
MRE11_PYRFU
[Raw transfer]




21 HHSearch 96.79100% -58 - C2 -2XMO - ? -
1 PsiBlast_PDB 96.5899% -58 - C2 -2XMO - ? -
41 Fugue 96.5199% -56 - C2 -2XMO - ? -
24 HHSearch 50.6814% -68 - C2 -3D03 - ? -
23 HHSearch 50.1517% -64 - C2 -3IB7 - CPDA_MYCTU -
25 HHSearch 49.5019% -54 - C2 -1UTE - PPA5_PIG -
22 HHSearch 48.3113% -39 * C2 *2NXF - ADPRM_DANRE -
33 HHSearch 47.5115% -55 - C2 -3AV0 - MRE11_METJA -
31 HHSearch 46.7813% -55 - C2 -1UF3 - ? -
37 HHSearch 45.9918% -53 - C2 -3THO - RAD50_THEMA -
42 Fugue 45.5417% -43 - C2 -2HY1 - CPDA_MYCTU -
39 HHSearch 45.4619% -68 - C2 -3CK2 - ? -
38 HHSearch 45.3414% -85 - C2 -1S3L - P936_METJA -
30 HHSearch 45.0114% -57 - C2 -2QFP - PPAF_PHAVU -
44 Fugue 44.8012% -37 - C2 -2DXN - ? -
46 Fugue 44.5712% -36 - C2 -2NXF - ADPRM_DANRE -
35 HHSearch 44.5616% -41 - C2 -3T1I - MRE11_HUMAN -
26 HHSearch 44.3612% -46 - C2 -3TGH - ? -
29 HHSearch 43.7613% -57 - C2 -1XZW - PPAF1_IPOBA -
36 HHSearch 43.6817% -44 - C2 -3RQZ - ? -