@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2653: (2016-04-06 )
MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGYADAQAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVEMEIRDLLTEYEFPGDDIPVIKGSALKALQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSNISK

Atome Classification :

(60 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4RCZ)
IF2G_SULSO
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_B_6(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_7(3V11)
IF2G_SULSO
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_2(3WYA)
EF1A_PYRHO
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(2PMD)
IF2G_SULSO
[Raw transfer]




GNP_A_5(2AHO)
IF2G_SULSO
[Raw transfer]




GDP_A_2(3PEN)
IF2G_SULSO
[Raw transfer]




GDP_B_4(2PMD)
IF2G_SULSO
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_A_2(4RD6)
?
[Raw transfer]




GDP_A_5(2QN6)
IF2G_SULSO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GCP_A_26(4M53)
IF2G_SULSO
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GDP_B_6(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_2(4RD0)
IF2G_SULSO
[Raw transfer]




GDP_A_2(3SJZ)
IF2G_SULSO
[Raw transfer]




GDP_A_6(2QMU)
IF2G_SULSO
[Raw transfer]




GCP_B_6(3I1F)
IF2G_SULSO
[Raw transfer]




GNP_A_4(3QSY)
IF2G_SULSO
[Raw transfer]




FMT_A_8(4M4S)
IF2G_SULSO
[Raw transfer]




CHAIN_H_8(4CXH)
EF1A_AERPE
[Raw transfer]

-

FMT_A_23(4M53)
IF2G_SULSO
[Raw transfer]




EDO_A_16(4M2L)
IF2G_SULSO
[Raw transfer]




GNP_C_3(2P8W)

[Raw transfer]




20 PsiBlast_PDB 96.0875% -93 - C3 -4G5G 8.5 EFTU1_ECOLI
18 PsiBlast_PDB 96.0675% -97 - C3 -3U6K 7.3 EFTU1_ECOLI
47 PsiBlast_CBE 95.7474% -94 - C3 -1D8T 8.6 EFTU1_ECOLI
46 PsiBlast_CBE 95.5474%-100 - C3 -1D8T 8.9 EFTU1_ECOLI
28 PsiBlast_CBE 95.4575% -93 - C3 -3U6K 5.8 ?
41 PsiBlast_CBE 95.4374% -97 - C3 -1EFC 8.8 EFTU1_ECOLI
29 PsiBlast_CBE 95.0174% -95 - C3 -1DG1 7.3 EFTU2_ECOLI
30 PsiBlast_CBE 94.9474% -98 - C3 -1DG1 8.3 EFTU2_ECOLI
111 HHSearch 94.9174% -95 - C3 -2C78 9.5 EFTU1_THET8
9 PsiBlast_PDB 94.8272% -92 - C3 -1EXM 9.5 EFTU1_THETH
19 PsiBlast_PDB 94.7875% -96 - C3 -3U2Q 7.1 ?
7 PsiBlast_PDB 94.3972% -97 - C3 -2C78 9.5 EFTU1_THET8
44 PsiBlast_CBE 94.3574% -94 - C3 -2FX3 7.3 EFTU1_ECOLI
34 PsiBlast_CBE 94.3074%-106 - C3 -4PC3 - EFTU1_ECOLI -
17 PsiBlast_PDB 94.2772% -93 - C3 -4LC0 9.5 EFTU1_THETH
14 PsiBlast_PDB 94.1772% -93 - C3 -4LBW 9.7 EFTU1_THETH
1 PsiBlast_PDB 94.0572% -94 * C3 *1EFT 9.3 EFTU_THEAQ
13 PsiBlast_PDB 93.9972% -92 - C3 -4LBV 9.6 EFTU1_THETH
8 PsiBlast_PDB 93.9872% -94 - C3 -4H9G 9.7 EFTU1_THETH
35 PsiBlast_CBE 93.9674%-103 - C3 -4PC2 - ? -
40 PsiBlast_CBE 93.9474% -94 - C3 -1EFC 8.4 EFTU1_ECOLI
16 PsiBlast_PDB 93.7572% -89 - C3 -4LBZ 9.5 EFTU1_THETH
11 PsiBlast_PDB 93.6872% -95 - C3 -2C77 9.9 EFTU2_THET8
15 PsiBlast_PDB 93.5972% -92 - C3 -4LBY 9.4 EFTU1_THETH
37 PsiBlast_CBE 93.3675% -91 - C3 -1OB2 6.9 EFTU2_ECOLI
4 PsiBlast_PDB 93.0272% -92 - C3 -1B23 8.5 EFTU_THEAQ
3 PsiBlast_PDB 92.5172% -99 - C3 -1TUI 6.6 EFTU_THEAQ
38 PsiBlast_CBE 92.5074% -95 - C3 -2BVN 9.1 EFTU2_ECOLI
39 PsiBlast_CBE 92.4974% -95 - C3 -2BVN 8.7 EFTU2_ECOLI
52 PsiBlast_CBE 92.4670% -98 - C3 -4IW3 6.4 EFTU1_PSEPK
22 PsiBlast_CBE 92.3272% -96 - C3 -1TUI 6.7 EFTU_THEAQ
21 PsiBlast_CBE 92.0772% -98 - C3 -1TUI 6.1 EFTU_THEAQ
10 PsiBlast_PDB 91.9872%-100 - C3 -1HA3 9.1 EFTU1_THET8
51 PsiBlast_CBE 91.7270%-101 - C3 -4IW3 7.6 EFTU1_PSEPK
27 PsiBlast_CBE 91.0272%-105 - C3 -1HA3 8.2 EFTU1_THET8
31 PsiBlast_CBE 89.2074%-100 - C3 -4PC7 7.7 EFTU1_ECOLI
67 PsiBlast_CBE 71.6236% -81 - C3 -3WY9 8.3 EF1A_PYRHO
65 PsiBlast_CBE 71.2636% -81 - C3 -3WYA 8.4 EF1A_PYRHO
103 Fugue 70.8331% -79 - C3 -1KK1 8.0 IF2G_PYRAB
68 PsiBlast_CBE 70.4434% -70 - C3 -4CXH 3.2 EF1A_AERPE
70 PsiBlast_CBE 70.2434% -70 - C3 -3VMF 7.8 EF1A_AERPE
66 PsiBlast_CBE 68.8036% -78 - C3 -3WY9 8.2 EF1A_PYRHO
45 PsiBlast_CBE 63.4674%-121 - C3 -1ETU 4.5 EFTU1_ECOLI
99 PsiBlast_CBE 59.3632% -81 - C3 -4M4S 3.0 IF2G_SULSO
100 PsiBlast_CBE 56.9132% -85 - C3 -4RD0 7.9 IF2G_SULSO
84 PsiBlast_CBE 56.4032% -83 - C3 -4RCZ 8.8 IF2G_SULSO
95 PsiBlast_CBE 56.1332% -85 - C3 -2PMD 5.0 IF2G_SULSO
79 PsiBlast_CBE 55.7132%-101 - C3 -2QN6 6.4 IF2G_SULSO
82 PsiBlast_CBE 55.5632% -86 - C3 -4RD6 7.9 ?
78 PsiBlast_CBE 54.6232% -82 - C3 -3V11 6.5 IF2G_SULSO
96 PsiBlast_CBE 54.4932% -81 - C3 -2PMD 5.3 IF2G_SULSO
80 PsiBlast_CBE 54.4532% -83 - C3 -2QMU 5.5 IF2G_SULSO
92 PsiBlast_CBE 53.9232% -89 - C3 -3I1F 2.7 IF2G_SULSO
81 PsiBlast_CBE 53.3132% -88 - C3 -2AHO 7.1 IF2G_SULSO
76 PsiBlast_CBE 52.7234% -74 - C3 -3PEN 8.3 IF2G_SULSO
77 PsiBlast_CBE 52.2834% -75 - C3 -4M53 8.6 IF2G_SULSO
97 PsiBlast_CBE 51.3033% -80 - C3 -3SJZ 6.2 IF2G_SULSO
98 PsiBlast_CBE 51.2433% -82 - C3 -4M2L 2.3 IF2G_SULSO
91 PsiBlast_CBE 49.4732% -64 - C3 -3QSY 5.0 IF2G_SULSO
108 Fugue 1.9054% 150 - C3 -2P8W 3.1