@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2662: (2016-04-06 )
MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPSYAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSNILCLGERVIGEGLALLLVDTWLEASFAGDRHKRRLDKITELERK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_B_4(3HEE)
?
[Raw transfer]




R5P_A_3(3HEE)
?
[Raw transfer]




RES_B_4(3K8C)
?
[Raw transfer]




R52_C_7(3K7S)
?
[Raw transfer]




R52_B_6(3K7S)
?
[Raw transfer]




RB5_A_3(3PH3)
?
[Raw transfer]




RB5_B_4(3PH3)
?
[Raw transfer]




R52_D_8(3K7S)
?
[Raw transfer]




RES_A_3(3K8C)
?
[Raw transfer]




AOS_B_4(3PH4)
?
[Raw transfer]




MLA_A_2(3SGW)
RPIB_COCIM
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




GOL_B_4(3HE8)
?
[Raw transfer]




GOL_A_3(3HE8)
?
[Raw transfer]




24 PsiBlast_CBE 96.5855%-132 - C12 -3HE8 2.2 ?
67 HHSearch 96.5055%-132 - C12 -3PH3 2.4 ?
2 PsiBlast_PDB 96.5055%-132 - C12 -3PH3 - ? -
1 PsiBlast_PDB 96.1955%-132 - C12 -3PH4 - ? -
23 PsiBlast_CBE 95.9155%-132 - C12 -3HEE 2.8 ?
65 HHSearch 95.9055%-130 - C12 -3HE8 1.7 ?
3 PsiBlast_PDB 95.9055%-130 - C12 -3HE8 1.7 ?
4 PsiBlast_PDB 95.4055%-127 - C12 -3HEE 3.1 ?
22 PsiBlast_CBE 95.2755%-129 - C12 -3PH3 1.9 ?
21 PsiBlast_CBE 94.9855%-129 - C12 -3PH4 1.6 ?
64 HHSearch 89.9549%-116 - C12 -2VVR - RPIB_ECOLI -
6 PsiBlast_PDB 88.8948%-117 - C12 -2VVR - RPIB_ECOLI -
5 PsiBlast_PDB 88.7449%-119 - C12 -1NN4 - RPIB_ECOLI -
13 PsiBlast_PDB 85.0440%-127 - C12 -4EM8 - ? -
29 PsiBlast_CBE 84.2941%-111 - C12 -3K7S 3.0 ?
68 HHSearch 83.9143%-138 - C12 -3S5P - ? -
7 PsiBlast_PDB 83.9143%-138 - C12 -3S5P - ? -
26 PsiBlast_CBE 83.8341%-114 - C12 -3K8C 3.0 ?
10 PsiBlast_PDB 83.8141%-112 - C12 -3K8C 3.2 ?
8 PsiBlast_PDB 83.8141%-110 - C12 -3K7O - ? -
28 PsiBlast_CBE 83.5941%-110 - C12 -3K7S 2.9 ?
27 PsiBlast_CBE 83.1741%-110 - C12 -3K7S 3.0 ?
62 PsiBlast_CBE 80.1834%-121 - C12 -3SGW 2.8 RPIB_COCIM