@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2674: (2016-04-06 )
MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPETPESVDYPRLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHNDTNVLALGARVIGPGLAEDIVKIWLETEYEGGRHANRVGQITAYEDSHA

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_B_4(3HEE)
?
[Raw transfer]



R5P_A_3(3HEE)
?
[Raw transfer]



R52_D_8(3K7S)
?
[Raw transfer]



RES_B_4(3K8C)
?
[Raw transfer]



R52_B_6(3K7S)
?
[Raw transfer]



R52_C_7(3K7S)
?
[Raw transfer]



RB5_A_3(3PH3)
?
[Raw transfer]



PSJ_B_5(4LFM)
?
[Raw transfer]



PSJ_D_6(4LFM)
?
[Raw transfer]



RES_A_3(3K8C)
?
[Raw transfer]



RBL_D_6(4LFN)
?
[Raw transfer]



RB5_B_4(3PH3)
?
[Raw transfer]



GOL_A_3(3HE8)
?
[Raw transfer]



RBL_B_5(4LFN)
?
[Raw transfer]



GOL_A_3(3HE8)
?
[Raw transfer]



GOL_B_4(3HE8)
?
[Raw transfer]



AOS_B_4(3PH4)
?
[Raw transfer]
3 PsiBlast_PDB 96.2251%-125 - C9 -3PH4 - ? -
24 PsiBlast_CBE 95.5151%-123 - C9 -3PH3 2.0 ?
2 PsiBlast_PDB 95.4951%-118 - C9 -3HEE 3.3 ?
4 PsiBlast_PDB 95.4751%-123 - C9 -3PH3 - ? -
23 PsiBlast_CBE 95.3051%-121 - C9 -3PH4 2.1 ?
74 HHSearch 95.2050%-124 - C9 -3PH3 2.2 ?
21 PsiBlast_CBE 95.1151%-119 - C9 -3HEE 3.1 ?
73 HHSearch 95.0651%-120 * C9 *3HE8 3.3 ?
1 PsiBlast_PDB 94.6651%-120 - C9 -3HE8 3.3 ?
22 PsiBlast_CBE 94.6151%-121 - C9 -3HE8 2.5 ?
71 HHSearch 92.3847%-120 - C9 -2VVR - RPIB_ECOLI -
7 PsiBlast_PDB 92.0647%-120 - C9 -2VVR - RPIB_ECOLI -
6 PsiBlast_PDB 91.6447%-121 - C9 -1NN4 - RPIB_ECOLI -
26 PsiBlast_CBE 89.8043%-122 - C9 -3K8C 3.3 ?
30 PsiBlast_CBE 89.7843%-116 - C9 -3M1P - ? -
9 PsiBlast_PDB 89.6743%-118 - C9 -3K7S - ? -
27 PsiBlast_CBE 89.1243%-118 - C9 -3K7S 3.3 ?
8 PsiBlast_PDB 89.1243%-117 - C9 -3K7O - ? -
28 PsiBlast_CBE 88.8843%-117 - C9 -3K7S 3.4 ?
12 PsiBlast_PDB 88.8743%-110 - C9 -3M1P - ? -
29 PsiBlast_CBE 88.2143%-117 - C9 -3K7S 3.2 ?
10 PsiBlast_PDB 88.0843%-115 - C9 -3K8C 3.5 ?
38 PsiBlast_CBE 79.6637%-121 - C9 -4LFM 2.5 ?
36 PsiBlast_CBE 79.5937%-121 - C9 -4LFN 2.4 ?
37 PsiBlast_CBE 78.9537%-123 - C9 -4LFM 2.4 ?
35 PsiBlast_CBE 78.7237%-120 - C9 -4LFN 2.5 ?