@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2700: (2016-04-06 )
MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVGYRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQLDQIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPVVDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIVLRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYVRSEI

Atome Classification :

(92 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_6(3WBW)
?
[Raw transfer]




NAP_A_2(3LD5)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2PD5)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2PDK)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(4QXI)
?
[Raw transfer]




NAP_A_2(3M64)
ALDR_HUMAN
[Raw transfer]




NAP_B_2(1AZ1)
ALDR_HUMAN
[Raw transfer]




NDP_A_4(3WBW)
?
[Raw transfer]




NAP_A_2(2PD9)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(3M4H)
ALDR_HUMAN
[Raw transfer]




NAP_A_5(4JIR)
ALDR_HUMAN
[Raw transfer]




NAD_C_3(1M9H)
DKGA_CORSC
[Raw transfer]




NAP_A_2(2PDI)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(3MC5)
ALDR_HUMAN
[Raw transfer]




NDP_A_2(1US0)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2PDB)
ALDR_HUMAN
[Raw transfer]




NDP_B_2(2F2K)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2PDC)
ALDR_HUMAN
[Raw transfer]




NDP_A_4(3WBW)
?
[Raw transfer]




NAP_A_2(3LZ5)
ALDR_HUMAN
[Raw transfer]




NAP_B_2(1AZ2)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(3LZ3)
ALDR_HUMAN
[Raw transfer]




NDP_A_3(3D3F)
GR_BACSU
[Raw transfer]




NAP_A_2(3M0I)
ALDR_HUMAN
[Raw transfer]




NAP_A_3(3H4G)
AK1A1_PIG
[Raw transfer]




NAP_B_2(1EL3)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(4GAB)
AK1BA_HUMAN
[Raw transfer]




NAP_A_2(3H7U)
AKRC9_ARATH
[Raw transfer]




NDP_A_3(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_A_2(3LEN)
ALDR_HUMAN
[Raw transfer]




NAP_A_6(3CV7)
AK1A1_PIG
[Raw transfer]




NAP_A_2(2ISF)
ALDR_HUMAN
[Raw transfer]




NDP_B_4(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_A_5(3FX4)
AK1A1_PIG
[Raw transfer]




NAP_A_2(3H7U)
AKRC9_ARATH
[Raw transfer]




NAP_A_2(3H7R)
AKRC8_ARATH
[Raw transfer]




NAP_B_2(1A80)
DKGA_CORSC
[Raw transfer]




NAP_B_2(1T40)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(4GA8)
AK1BA_HUMAN
[Raw transfer]




NAP_A_2(4QX4)
ALDR_HUMAN
[Raw transfer]




NAP_A_3(4GIE)
PGFS_TRYCC
[Raw transfer]




NAP_X_2(1ZUA)
AK1BA_HUMAN
[Raw transfer]




NAP_A_2(3LEP)
ALDR_HUMAN
[Raw transfer]




NAP_B_8(3Q67)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2IPW)
ALDR_HUMAN
[Raw transfer]




NDP_B_4(3D3F)
GR_BACSU
[Raw transfer]




NAP_A_2(1IEI)
ALDR_HUMAN
[Raw transfer]




NAP_A_3(1VP5)
?
[Raw transfer]




NAP_B_4(1VP5)
?
[Raw transfer]




NAP_A_3(1VP5)
?
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_D_4(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_A_2(2PDJ)
ALDR_HUMAN
[Raw transfer]




NAP_A_2(2PDL)
ALDR_HUMAN
[Raw transfer]




NAP_A_3(4GQ0)
AK1BA_HUMAN
[Raw transfer]




NAP_A_2(4GQG)
AK1BA_HUMAN
[Raw transfer]




NAP_B_4(3QKZ)
ALD1_RAT
[Raw transfer]




NAP_A_3(3QKZ)
ALD1_RAT
[Raw transfer]




NAP_B_2(1HQT)
AK1A1_PIG
[Raw transfer]




CIT_E_5(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_B_4(3O3R)
ALD1_RAT
[Raw transfer]




NAP_X_2(4JII)
AK1BA_HUMAN
[Raw transfer]




NAP_A_3(4I5X)
AK1BA_HUMAN
[Raw transfer]




CIT_F_6(1VBJ)
PGFS_TRYBB
[Raw transfer]




GLU_A_3(4FZI)
PGFS_TRYCC
[Raw transfer]




GOL_H_8(1MZR)
DKGA_ECOLI
[Raw transfer]




EDO_A_10(4F40)
PGFS_LEIMA
[Raw transfer]




NAP_A_3(3O3R)
ALD1_RAT
[Raw transfer]




EDO_B_20(4F40)
PGFS_LEIMA
[Raw transfer]




NDP_B_4(3WBY)
?
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GLU_B_4(4FZI)
PGFS_TRYCC
[Raw transfer]




NAP_B_7(3KRB)
?
[Raw transfer]




NAP_A_3(3KRB)
?
[Raw transfer]




NDP_A_3(3WBY)
?
[Raw transfer]




C2U_A_7(3CV7)
AK1A1_PIG
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




ALR_C_3(1AZ1)
ALDR_HUMAN
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




NA7_A_3(2WZM)
Y2407_MYCS2
[Raw transfer]




NA7_B_4(2WZM)
Y2407_MYCS2
[Raw transfer]




NA7_A_3(2WZM)
Y2407_MYCS2
[Raw transfer]




EPR_A_2(4JIR)
ALDR_HUMAN
[Raw transfer]




3E2_A_3(4QX4)
ALDR_HUMAN
[Raw transfer]




FX4_A_6(3FX4)
AK1A1_PIG
[Raw transfer]




FLC_A_4(4GAC)
AK1A1_MOUSE
[Raw transfer]




EDO_A_12(4F40)
PGFS_LEIMA
[Raw transfer]




FLC_B_6(4GAC)
AK1A1_MOUSE
[Raw transfer]




NAP_B_8(3Q67)
ALDR_HUMAN
[Raw transfer]




24 PsiBlast_CBE 95.2549% -79 - C9 -3D3F 10.4 GR_BACSU
104 HHSearch 95.1749% -77 - C9 -3F7J - GR_BACSU -
23 PsiBlast_CBE 94.7948% -79 - C9 -3F7J - GR_BACSU -
4 PsiBlast_PDB 94.6148% -77 - C9 -3F7J - GR_BACSU -
5 PsiBlast_PDB 94.5649% -75 - C9 -3D3F 11.9 GR_BACSU
22 PsiBlast_CBE 93.8646% -73 - C9 -1VBJ 9.4 PGFS_TRYBB
2 PsiBlast_PDB 93.1546% -79 - C9 -4GIE 12.9 PGFS_TRYCC
3 PsiBlast_PDB 92.8946% -79 - C9 -1VBJ 11.3 PGFS_TRYBB
102 HHSearch 92.7446% -79 - C9 -1VBJ 11.3 PGFS_TRYBB
1 PsiBlast_PDB 92.0546% -77 - C9 -4FZI 2.7 PGFS_TRYCC
25 PsiBlast_CBE 91.7644% -78 - C9 -4G5D 12.8 PGFS_LEIMA
21 PsiBlast_CBE 91.1446% -80 - C9 -4FZI 2.6 PGFS_TRYCC
7 PsiBlast_PDB 90.9444% -80 - C9 -4G5D 12.4 PGFS_LEIMA
9 PsiBlast_PDB 90.9144% -77 - C9 -3B3D - YTBE_BACSU -
30 PsiBlast_CBE 90.7244% -76 - C9 -3B3D - YTBE_BACSU -
31 PsiBlast_CBE 90.5744% -80 - C9 -3B3D - YTBE_BACSU -
26 PsiBlast_CBE 90.3744% -79 - C9 -4F40 2.7 PGFS_LEIMA
106 HHSearch 89.4945% -71 - C9 -3B3D - YTBE_BACSU -
6 PsiBlast_PDB 89.3444% -78 - C9 -4F40 2.7 PGFS_LEIMA
35 PsiBlast_CBE 89.2644% -81 - C9 -4Q3M - ? -
11 PsiBlast_PDB 88.4541% -79 - C9 -1MZR 2.4 DKGA_ECOLI
52 PsiBlast_CBE 87.6539% -79 - C9 -1M9H 6.1 DKGA_CORSC
103 HHSearch 87.5744% -82 - C9 -3O0K 2.3 ?
118 HHSearch 87.4337% -74 - C9 -3H7U 10.1 AKRC9_ARATH
28 PsiBlast_CBE 87.2945% -84 - C9 -3O0K 2.9 ?
50 PsiBlast_CBE 87.2636% -82 - C9 -4GAC 3.5 AK1A1_MOUSE
47 PsiBlast_CBE 87.2036% -82 - C9 -3H4G 10.2 AK1A1_PIG
27 PsiBlast_CBE 87.1445% -80 - C9 -3O0K 2.8 ?
51 PsiBlast_CBE 86.8436% -79 - C9 -4GAC 2.2 AK1A1_MOUSE
8 PsiBlast_PDB 86.6145% -82 - C9 -3O0K 2.3 ?
55 PsiBlast_CBE 86.4236% -81 - C9 -3H7U 9.2 AKRC9_ARATH
49 PsiBlast_CBE 86.1836% -80 - C9 -3CV7 9.7 AK1A1_PIG
43 PsiBlast_CBE 86.0739% -80 - C9 -1A80 11.0 DKGA_CORSC
29 PsiBlast_CBE 85.9945% -84 - C9 -3O0K 2.6 ?
53 PsiBlast_CBE 85.7936% -77 - C9 -1HQT 8.0 AK1A1_PIG
74 PsiBlast_CBE 85.6736% -79 - C9 -2ISF 10.9 ALDR_HUMAN
76 PsiBlast_CBE 85.3636% -77 - C9 -1AZ2 11.4 ALDR_HUMAN
91 PsiBlast_CBE 85.2936% -78 - C9 -3MC5 13.9 ALDR_HUMAN
81 PsiBlast_CBE 85.2736% -78 - C9 -2PDB 13.6 ALDR_HUMAN
97 PsiBlast_CBE 85.2236% -77 - C9 -3LEN 12.9 ALDR_HUMAN
82 PsiBlast_CBE 85.2036% -81 - C9 -4JIR 13.7 ALDR_HUMAN
48 PsiBlast_CBE 85.1636% -80 - C9 -3FX4 7.9 AK1A1_PIG
14 PsiBlast_PDB 85.1442% -81 - C9 -3WBY 7.2 ?
12 PsiBlast_PDB 84.9343% -82 - C9 -3WBW 11.2 ?
68 PsiBlast_CBE 84.8636% -78 - C9 -2PDJ 12.6 ALDR_HUMAN
71 PsiBlast_CBE 84.8136% -79 - C9 -3Q67 2.2 ALDR_HUMAN
94 PsiBlast_CBE 84.7536% -77 - C9 -3M0I 13.6 ALDR_HUMAN
42 PsiBlast_CBE 84.6137% -77 - C9 -2WZM 8.2 Y2407_MYCS2
15 PsiBlast_PDB 84.5942% -80 - C9 -1VP5 11.9 ?
79 PsiBlast_CBE 84.5636% -77 - C9 -2PD5 12.7 ALDR_HUMAN
17 PsiBlast_PDB 84.5137% -76 - C9 -2WZM 8.1 Y2407_MYCS2
77 PsiBlast_CBE 84.4636% -80 - C9 -1AZ1 13.2 ALDR_HUMAN
41 PsiBlast_CBE 84.4642% -80 - C9 -1VP5 11.4 ?
89 PsiBlast_CBE 84.4536% -78 - C9 -2PDL 13.6 ALDR_HUMAN
60 PsiBlast_CBE 84.4533% -78 - C9 -4GAB 12.9 AK1BA_HUMAN
40 PsiBlast_CBE 84.4242% -80 - C9 -3WBY 5.6 ?
39 PsiBlast_CBE 84.3843% -84 - C9 -3WBW 10.5 ?
101 HHSearch 84.3036% -76 - C9 -2WZM 8.1 Y2407_MYCS2
95 PsiBlast_CBE 84.2736% -79 - C9 -3LZ5 13.8 ALDR_HUMAN
70 PsiBlast_CBE 84.2536% -79 - C9 -3Q67 10.3 ALDR_HUMAN
92 PsiBlast_CBE 84.2436% -79 - C9 -3M64 13.7 ALDR_HUMAN
56 PsiBlast_CBE 84.2433% -77 - C9 -4JII 12.9 AK1BA_HUMAN
75 PsiBlast_CBE 84.2236% -78 - C9 -2IPW 9.6 ALDR_HUMAN
100 PsiBlast_CBE 84.1936% -78 - C9 -4QX4 10.9 ALDR_HUMAN
93 PsiBlast_CBE 84.1936% -80 - C9 -3M4H 13.7 ALDR_HUMAN
86 PsiBlast_CBE 84.0636% -79 - C9 -1EL3 11.3 ALDR_HUMAN
62 PsiBlast_CBE 84.0333% -76 - C9 -1ZUA 11.2 AK1BA_HUMAN
80 PsiBlast_CBE 84.0136% -78 - C9 -2PDC 13.7 ALDR_HUMAN
112 HHSearch 83.8842% -75 * C9 *1VP5 12.8 ?
57 PsiBlast_CBE 83.8633% -73 - C9 -4GQG 13.1 AK1BA_HUMAN
114 HHSearch 83.8039% -71 - C9 -1US0 14.2 ALDR_HUMAN
87 PsiBlast_CBE 83.6936% -80 - C9 -3LEP 13.5 ALDR_HUMAN
19 PsiBlast_PDB 83.6638% -85 - C9 -3H7R 9.8 AKRC8_ARATH
98 PsiBlast_CBE 83.6136% -77 - C9 -3LD5 13.0 ALDR_HUMAN
69 PsiBlast_CBE 83.6136% -78 - C9 -2PDI 12.9 ALDR_HUMAN
61 PsiBlast_CBE 83.5733% -76 - C9 -4GA8 13.1 AK1BA_HUMAN
99 PsiBlast_CBE 83.5536% -79 - C9 -4QXI 12.9 ?
108 HHSearch 83.5441% -79 - C9 -3WBW 11.2 ?
59 PsiBlast_CBE 83.2633% -76 - C9 -4I5X 13.0 AK1BA_HUMAN
85 PsiBlast_CBE 83.1736% -76 - C9 -1IEI 7.4 ALDR_HUMAN
58 PsiBlast_CBE 83.1333% -78 - C9 -4GQ0 12.9 AK1BA_HUMAN (first)
90 PsiBlast_CBE 83.1036% -78 - C9 -2PDK 13.8 ALDR_HUMAN
78 PsiBlast_CBE 83.0936% -77 - C9 -2PD9 12.7 ALDR_HUMAN
84 PsiBlast_CBE 83.0836% -78 - C9 -1T40 8.5 ALDR_HUMAN
63 PsiBlast_CBE 83.0033% -78 - C9 -3KRB 8.8 ?
64 PsiBlast_CBE 82.9433% -78 - C9 -3KRB 9.0 ?
83 PsiBlast_CBE 82.5836% -76 - C9 -2F2K 12.5 ALDR_HUMAN
96 PsiBlast_CBE 82.3036% -78 - C9 -3LZ3 13.1 ALDR_HUMAN
65 PsiBlast_CBE 81.4934% -81 - C9 -3QKZ 12.4 ALD1_RAT
73 PsiBlast_CBE 81.0934% -79 - C9 -3O3R 11.3 ALD1_RAT
72 PsiBlast_CBE 80.2534% -82 - C9 -3O3R 12.1 ALD1_RAT
66 PsiBlast_CBE 79.9734% -80 - C9 -3QKZ 11.8 ALD1_RAT