@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2704: (2016-04-06 )
MAYQALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNLEETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQLTQAGQSVAGGGNVPADAASGSDVSDLKRQMEQMHQEIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQLIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETITSSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDADAEDGANPEAKKPAEDPFVAEAAKLVGEDLLEIKD

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_6(1NJF)
DPO3X_ECOLI
[Raw transfer]



AGS_B_8(1NJF)
DPO3X_ECOLI
[Raw transfer]



AGS_D_12(1NJF)
DPO3X_ECOLI
[Raw transfer]



NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLF)
DPO3X_ECOLI
[Raw transfer]
-
NACID_K_11(3GLG)
DPO3X_ECOLI
[Raw transfer]
-
NACID_M_13(3GLI)
DPO3X_ECOLI
[Raw transfer]
-
77 HHSearch 90.5539% -96 - C1 -1JR3 - DPO3X_ECOLI -
67 Fugue 90.4738% -93 - C1 -1JR3 - DPO3X_ECOLI -
4 PsiBlast_PDB 90.1545% -98 - C1 -3GLF 2.2 DPO3X_ECOLI
40 PsiBlast_CBE 89.8945% -99 - C1 -3GLF 3.5 DPO3X_ECOLI
39 PsiBlast_CBE 88.1245% -94 - C1 -3GLF 2.5 DPO3X_ECOLI
44 PsiBlast_CBE 87.6744% -94 - C1 -3GLG 2.5 DPO3X_ECOLI
34 PsiBlast_CBE 87.6145% -94 - C1 -3GLI 4.1 DPO3X_ECOLI
7 PsiBlast_PDB 87.5344% -97 - C1 -3GLG 2.4 DPO3X_ECOLI
36 PsiBlast_CBE 87.3045% -94 - C1 -3GLI 3.6 DPO3X_ECOLI
47 PsiBlast_CBE 87.2844% -94 - C1 -3GLG 2.1 DPO3X_ECOLI
35 PsiBlast_CBE 87.2245% -95 - C1 -3GLI 4.2 DPO3X_ECOLI
45 PsiBlast_CBE 87.1244% -95 - C1 -3GLG 3.5 DPO3X_ECOLI
42 PsiBlast_CBE 87.0045% -96 - C1 -3GLF 2.2 DPO3X_ECOLI
33 PsiBlast_CBE 86.8645% -93 - C1 -3GLI 4.0 DPO3X_ECOLI
38 PsiBlast_CBE 86.7745% -96 - C1 -3GLF 2.4 DPO3X_ECOLI
3 PsiBlast_PDB 86.4745%-100 - C1 -1XXI - DPO3X_ECOLI -
1 PsiBlast_PDB 86.4745% -97 - C1 -1JR3 - DPO3X_ECOLI -
41 PsiBlast_CBE 86.4645% -94 - C1 -3GLF 2.3 DPO3X_ECOLI
37 PsiBlast_CBE 86.4345% -93 - C1 -3GLI 4.0 DPO3X_ECOLI
25 PsiBlast_CBE 86.2245% -96 - C1 -1XXH - DPO3X_ECOLI -
5 PsiBlast_PDB 86.1945% -97 - C1 -3GLI 2.1 DPO3X_ECOLI
46 PsiBlast_CBE 85.7444% -97 - C1 -3GLG 2.2 DPO3X_ECOLI
43 PsiBlast_CBE 85.1744% -95 - C1 -3GLG 2.1 DPO3X_ECOLI
50 PsiBlast_CBE 82.5651%-100 - C1 -1NJF Error DPO3X_ECOLI
9 PsiBlast_PDB 81.9151% -99 - C1 -1NJF Error DPO3X_ECOLI
51 PsiBlast_CBE 81.6751% -99 - C1 -1NJF Error DPO3X_ECOLI