@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2715: (2016-04-06 )
MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTLIAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPALPTFEEETKEIERINTENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNDVEVEKLRPQIPELTSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRPIEL

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




73 HHSearch 85.7822% -90 - C1 -3B60 - MSBA_SALTY -
94 Fugue 84.6521% -89 - C1 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 82.4325% -98 - C1 -4Q4H - ? -
2 PsiBlast_PDB 82.1525% -99 - C1 -3QF4 - ? -
5 PsiBlast_PDB 82.0126% -95 - C1 -2HYD - Y1866_STAAM -
3 PsiBlast_PDB 81.8625% -96 - C1 -4Q4A - ? -
1 PsiBlast_PDB 81.4325% -96 - C1 -4Q4J - ? -
6 PsiBlast_PDB 81.0726% -95 - C1 -2ONJ - Y1866_STAAM -
76 HHSearch 76.7621% -90 - C1 -3WMG - ? -
75 HHSearch 71.7120% -91 - C1 -3ZDQ - ABCBA_HUMAN -
10 PsiBlast_PDB 71.5027% -79 - C1 -4S0F - ? -
9 PsiBlast_PDB 70.2627% -89 - C1 -4RY2 - ? -
7 PsiBlast_PDB 66.8326% -95 - C1 -4A82 - Y1866_STAAM -
74 HHSearch 65.6520% 16 - C- -3B5X - MSBA_VIBCH -
100 Fugue 63.2019% -94 - C1 -4F4C - PGP1_CAEEL -
29 PsiBlast_CBE 62.5436% -84 - C1 -1XEF 7.3 HLYBP_ECOLX
27 PsiBlast_CBE 62.1436% -85 - C1 -1XEF 7.0
18 PsiBlast_PDB 62.1236% -85 - C1 -1XEF 6.4 HLYBP_ECOLX
24 PsiBlast_CBE 61.8236% -85 - C1 -2FGJ 6.9
28 PsiBlast_CBE 61.7136% -87 - C1 -1XEF 6.9 HLYBP_ECOLX
20 PsiBlast_PDB 61.6536% -83 - C1 -2FGJ 7.1 HLYBP_ECOLX
26 PsiBlast_CBE 61.5236% -84 - C1 -2FGJ 7.4 HLYBP_ECOLX
25 PsiBlast_CBE 61.1436% -82 - C1 -2FGJ 7.0 HLYBP_ECOLX
21 PsiBlast_CBE 60.0636% -87 - C1 -2FGK 7.3
22 PsiBlast_CBE 59.7236% -81 - C1 -2FGK 6.9 HLYBP_ECOLX
23 PsiBlast_CBE 59.6336% -84 - C1 -2FGK 7.2 HLYBP_ECOLX
17 PsiBlast_PDB 58.8036% -79 - C1 -3B5J 6.9
16 PsiBlast_PDB 58.4536% -86 - C1 -2FGK 7.5 HLYBP_ECOLX
19 PsiBlast_PDB 58.1836% -80 - C1 -2FFA 6.5
51 PsiBlast_CBE 57.6132% -73 - C1 -3NH9 6.3
13 PsiBlast_PDB 57.5336% -81 - C1 -2PMK 7.1
50 PsiBlast_CBE 56.7732% -74 - C1 -3NHA 6.6
49 PsiBlast_CBE 56.6332% -74 - C1 -3NHB 6.7
82 HHSearch 56.6035% -80 - C1 -2FF7 6.5
15 PsiBlast_PDB 56.5536% -78 - C1 -2FFB 6.4
12 PsiBlast_PDB 56.4736% -80 - C1 -2FF7 6.5
68 PsiBlast_CBE 53.6631% -71 - C1 -1MV5 5.6 LMRA_LACLA
70 PsiBlast_CBE 53.2931% -64 - C1 -1MV5 6.6 LMRA_LACLA
67 PsiBlast_CBE 52.4931% -71 - C1 -1MV5 3.1
69 PsiBlast_CBE 48.8131% -64 - C1 -1MV5 3.9 LMRA_LACLA