@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2720: (2016-04-06 )
MNSENLIAPELYNITDEIAKFSSEKTALIWKNEHGETKTWSYHHLLEQANKFANVAKDAGIKKGDHVIVMTPRLLETYAIYMGLWKAGAIIIPASELLKAHDLEYRIHHANVKAIVSYNGMTAEFDKIESIPSVSKKIIVGDKLSGWEQYETLMEAAPTEFERVETSRDDACLLAFTSGTTGNPKGVVHIHGWGYAHIRIAADHWLDIHEDDIVWATAGPGWQKWVWSPFLSVLGKGATGFIYNGRFIPEKQLHLLEEEKINVLCCTPTEYRLMAKVNNLREHDLSSLRSAVSAGEPLNREVIQVFRDNFDIKVRDGYGQTESTLLIGTLVDTPIRPGSMGKPIMPEYMAIIDADGNPVGVGEIGDIAMRRDFPALFKEYYKEPERLQKAIRGDYFVSGDRAIRDEDNYYWFQGRNDDIIISSGYTIGPFEVEDALTHHPAVKEVAVVASPDEIRGTVVKAFIVVKDGYKGTDDLVHELQTFTKEQTAPYKYPRRIEFVEALPKTDSGKIRRVELRDAEFASVHG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(3C5E)
ACS2A_HUMAN
[Raw transfer]




APC_A_7(3DAY)
ACS2A_HUMAN
[Raw transfer]




ATP_A_7(3C5E)
ACS2A_HUMAN
[Raw transfer]




COA_A_4(3GPC)
ACS2A_HUMAN
[Raw transfer]




AMP_A_3(3EQ6)
ACS2A_HUMAN
[Raw transfer]




AMP_B_5(3EQ6)
ACS2A_HUMAN
[Raw transfer]




COA_B_6(3GPC)
ACS2A_HUMAN
[Raw transfer]




GOL_B_23(3ETC)
?
[Raw transfer]




GOL_B_21(3ETC)
?
[Raw transfer]




PGE_B_17(3ETC)
?
[Raw transfer]




1PE_A_5(3ETC)
?
[Raw transfer]




1PE_A_6(3ETC)
?
[Raw transfer]




43 HHSearch 94.3837% -94 - C3 -3C5E 8.5 ACS2A_HUMAN
21 PsiBlast_CBE 94.2640% -87 - C3 -3ETC 4.2 ?
41 HHSearch 93.9440% -89 - C3 -3ETC 2.4 ?
27 PsiBlast_CBE 93.4937% -90 - C3 -2WD9 - ACS2A_HUMAN -
23 PsiBlast_CBE 93.3337% -90 - C3 -3EQ6 5.5 ACS2A_HUMAN
26 PsiBlast_CBE 93.3137% -90 - C3 -2WD9 - ACS2A_HUMAN -
1 PsiBlast_PDB 93.2340% -86 - C3 -3ETC 3.2 ?
4 PsiBlast_PDB 93.1637% -96 - C3 -3DAY 8.9 ACS2A_HUMAN
3 PsiBlast_PDB 93.0737% -95 - C3 -3C5E 8.5 ACS2A_HUMAN
5 PsiBlast_PDB 93.0337% -89 - C3 -2VZE - ACS2A_HUMAN -
6 PsiBlast_PDB 92.9337% -90 - C3 -3EQ6 5.8 ACS2A_HUMAN
8 PsiBlast_PDB 92.8637% -90 - C3 -2WD9 - ACS2A_HUMAN -
25 PsiBlast_CBE 92.6637% -89 - C3 -2VZE - ACS2A_HUMAN -
7 PsiBlast_PDB 92.2237% -96 - C3 -3GPC 6.1 ACS2A_HUMAN
24 PsiBlast_CBE 92.2037% -89 - C3 -2VZE - ACS2A_HUMAN -
2 PsiBlast_PDB 92.0137% -88 - C3 -3B7W - ACS2A_HUMAN -
22 PsiBlast_CBE 91.4037% -95 - C3 -3GPC 5.9 ACS2A_HUMAN
11 PsiBlast_PDB 86.2128% -80 - C3 -2P2M - ACSA_SALTY -
17 PsiBlast_PDB 86.1328% -78 - C3 -2P2J - ACSA_SALTY -
10 PsiBlast_PDB 85.9428% -80 - C3 -2P2B - ACSA_SALTY -