@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2745: (2016-04-06 )
MDQKKYSWRKFFQLLISAKPANWIIFCALFASVITTVAGLVVPLFTKNLIDGFSIASLDVKMIALIVLAFILQAITNGFSIFLLNYMGQKVVATIRERLWKKIVHLPVSYFDNTKTGEMVSRMVNDTVVVKELIADHLPQFVTGIISVVGAIIILFFMDWKMTLIILVAVPITALVVAPLGQKMFKISKGLQNETANFTGSISQTLSEARLVKASNAETLETEAGHQGINRLFGFGIREAKVVAVLGPLIFFVVMGVIVGIIGYGGIRVSAGTMTTGTLIAFLLYLFQIIVPVTSFATFFAQLQKAKGATERIADILNETEEDFDAGKKVDVSGKTIRASDISFSYNEGEPILKHVSFDTKPGEVIAFAGPSGGGKSTLFAILERFYQPKTGEILVGDIPLSEISINSWRTQIGYVSQESAMLSGTIRDNLCYGLDREITEDELWNVAKLAYADGFISELPDKMATEVGERGVKLSGGQRQRIAIARAFLRNPNILMLDEATASLDSQSEQIVQQALANLMEGRTTFVIAHRLSTIVNADQILFIEHGEITGRGTHSELVASHPLYASFAEQQLK

Atome Classification :

(54 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




6 PsiBlast_PDB 89.5132%-115 - C3 -4Q4A - Y288_THEMA -
5 PsiBlast_PDB 88.6732%-114 - C3 -3QF4 - Y288_THEMA -
7 PsiBlast_PDB 87.9932%-111 - C3 -4Q4H - Y288_THEMA -
8 PsiBlast_PDB 87.2132%-112 - C3 -4Q4J - Y288_THEMA -
20 PsiBlast_PDB 84.0330%-113 - C3 -4F4C - PGP1_CAEEL -
106 HHSearch 83.8129%-109 - C3 -3WMG - ? -
15 PsiBlast_PDB 83.4331%-109 - C3 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 83.4231%-111 - C3 -4AYX 5.7 ABCBA_HUMAN
13 PsiBlast_PDB 82.1031%-106 - C3 -4AYT 6.0 ABCBA_HUMAN
33 PsiBlast_CBE 81.8832%-102 - C3 -2ONJ 6.1 Y1866_STAAM
16 PsiBlast_PDB 81.8531%-112 - C3 -4AYW 5.7 ABCBA_HUMAN
103 HHSearch 81.8430%-104 * C3 *3B60 - MSBA_SALTY -
10 PsiBlast_PDB 81.7832%-100 - C3 -2HYD 4.7 Y1866_STAAM
124 Fugue 81.6330%-104 - C3 -3B60 - MSBA_SALTY -
105 HHSearch 81.5931%-104 - C3 -3ZDQ - ABCBA_HUMAN -
11 PsiBlast_PDB 81.5532%-101 - C3 -2ONJ 6.2 Y1866_STAAM
26 PsiBlast_CBE 81.4831%-104 - C3 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 81.0131%-104 - C3 -3B60 - MSBA_SALTY -
34 PsiBlast_CBE 80.8832%-102 - C3 -2HYD 4.4 Y1866_STAAM
25 PsiBlast_CBE 80.5731%-104 - C3 -3B60 - MSBA_SALTY -
19 PsiBlast_PDB 78.8330%-104 - C3 -4S0F 4.8 ?
23 PsiBlast_CBE 64.1262% -98 - C3 -1MV5 4.2 LMRA_LACLA
22 PsiBlast_CBE 62.1962%-104 - C3 -1MV5 5.6 LMRA_LACLA
1 PsiBlast_PDB 61.0362% -96 - C3 -1MV5 6.2 LMRA_LACLA
21 PsiBlast_CBE 60.5362%-104 - C3 -1MV5 4.0
110 HHSearch 60.3262% -93 - C3 -1MV5 6.2 LMRA_LACLA
56 PsiBlast_CBE 59.2841% -85 - C3 -3NH9 6.2
73 PsiBlast_CBE 57.1342%-103 - C3 -1XEF 7.1 HLYBP_ECOLX
68 PsiBlast_CBE 56.9142% -93 - C3 -2FGJ 7.1 HLYBP_ECOLX
114 HHSearch 56.2542% -98 - C3 -2FF7 6.5
75 PsiBlast_CBE 56.1942%-100 - C3 -1XEF 6.6 HLYBP_ECOLX
74 PsiBlast_CBE 55.9342% -99 - C3 -1XEF 7.3 HLYBP_ECOLX
70 PsiBlast_CBE 55.7342% -95 - C3 -2FGJ 7.1 HLYBP_ECOLX
71 PsiBlast_CBE 55.6242% -98 - C3 -2FFA 6.5
58 PsiBlast_CBE 55.5842%-100 - C3 -2FF7 6.6
67 PsiBlast_CBE 55.3242%-100 - C3 -2FGJ 7.1
60 PsiBlast_CBE 54.8042%-102 - C3 -2PMK 7.1
72 PsiBlast_CBE 54.7342% -98 - C3 -1XEF 7.2
65 PsiBlast_CBE 54.5342%-101 - C3 -2FFB 6.3
69 PsiBlast_CBE 54.4442% -96 - C3 -2FGJ 7.5 HLYBP_ECOLX
82 PsiBlast_CBE 54.3139% -99 - C3 -2IXF 7.6 TAP1_RAT
55 PsiBlast_CBE 54.3041% -86 - C3 -3NHA 6.6
54 PsiBlast_CBE 54.2241% -88 - C3 -3NHB 6.7
87 PsiBlast_CBE 53.9739% -92 - C3 -1JJ7 6.0
83 PsiBlast_CBE 53.9239% -99 - C3 -2IXF 7.5 TAP1_RAT
66 PsiBlast_CBE 53.9142%-100 - C3 -3B5J 6.9
61 PsiBlast_CBE 53.3642% -96 - C3 -2FGK 7.3
63 PsiBlast_CBE 52.9542% -95 - C3 -2FGK 7.4 HLYBP_ECOLX
62 PsiBlast_CBE 52.0042% -93 - C3 -2FGK 6.9 HLYBP_ECOLX
64 PsiBlast_CBE 51.3742% -92 - C3 -2FGK 7.7 HLYBP_ECOLX
52 PsiBlast_CBE 48.3743% -97 - C3 -5DGX 6.8 ?
109 HHSearch 46.7030% -85 - C3 -3VX4 7.0 ?
91 PsiBlast_CBE 45.7831% -85 - C3 -3VX4 7.0 ?
102 PsiBlast_CBE 31.7331% -73 - C3 -3C41 4.5 ?