@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2747: (2016-04-06 )
MLDVKLLRNNFDEVKQKLQNRGEDLGEFEKFGELDKRRRTLIVETEALKSQRNEVSQEIAKLKREKQDADAKIEEMRVVGDRIKTLDIELREIDEKLDMILMSIPNIPHESTPVGESEDDNVEIRKWGEVRAFDFEPKAHWDLGTDLDILDFENAAKVTGSRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPKFEEDAFLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLIRQHQFNKVELVQFVKPEDSYVALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKKYDLEVWIPSYNSYREISSCSNFESFQARRANIRFRREPGSKPEYVHTLNGSGLALGRTVAAILENYQDADGSVRIPKVLQGYMGGIEKIELPK

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3LSS)
?
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




ATP_A_2(3QO7)
SYSC_CANAL
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]




SSA_C_3(1SET)
SYS_THET2
[Raw transfer]




SSA_A_2(3QO8)
SYSC_CANAL
[Raw transfer]




AMP_B_8(2ZR2)
SYS_PYRHO
[Raw transfer]




SSA_D_4(1SET)
SYS_THET2
[Raw transfer]




SSA_A_2(4L87)
SYSC_HUMAN
[Raw transfer]




AMP_D_4(1SES)
SYS_THET2
[Raw transfer]




AMP_A_3(2ZR2)
SYS_PYRHO
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]




43 HHSearch 86.4857% -66 - C5 -2DQ3 6.4 SYS_AQUAE
1 PsiBlast_PDB 85.2356% -69 - C5 -2DQ3 6.4 SYS_AQUAE
45 HHSearch 78.5445% -60 - C5 -2DQ0 6.4 SYS_PYRHO
21 PsiBlast_CBE 78.0442% -60 - C5 -2ZR2 5.7 SYS_PYRHO
3 PsiBlast_PDB 77.7742% -60 - C5 -2ZR2 5.7 SYS_PYRHO
22 PsiBlast_CBE 77.4242% -60 - C5 -2DQ0 6.5 SYS_PYRHO
2 PsiBlast_PDB 76.9542% -59 - C5 -2DQ0 6.4 SYS_PYRHO
4 PsiBlast_PDB 76.0042% -56 - C5 -2ZR3 - SYS_PYRHO -
46 HHSearch 72.8033% -63 - C5 -3VBB - SYSC_HUMAN -
44 HHSearch 72.0936% -54 - C5 -1SES 6.3 SYS_THET2
33 Fugue 72.0533% -57 - C5 -3LSS 5.6 ?
42 HHSearch 71.4734% -52 - C5 -3LSS 6.4 ?
8 PsiBlast_PDB 70.9636% -53 - C5 -1SET 6.5 SYS_THET2
23 PsiBlast_CBE 70.5536% -52 - C5 -1SET 6.6 SYS_THET2
7 PsiBlast_PDB 70.4136% -53 - C5 -1SES 6.3 SYS_THET2
24 PsiBlast_CBE 70.3836% -51 - C5 -1SES 5.6 SYS_THET2
5 PsiBlast_PDB 70.3636% -53 - C5 -1SRY - SYS_THET2 -
47 HHSearch 69.3733% -57 - C5 -3QNE - SYSC_CANAL -
32 Fugue 68.9428% -57 - C5 -1WLE - SYSM_BOVIN -
17 PsiBlast_PDB 67.6330% -61 - C5 -1WLE - SYSM_BOVIN -
10 PsiBlast_PDB 64.7436% -56 - C5 -3QO7 4.3 SYSC_CANAL
34 Fugue 64.5732% -48 - C5 -3ERR 6.1 DYHC1_MOUSE (first)
16 PsiBlast_PDB 64.0336% -65 - C5 -4L87 7.2 SYSC_HUMAN
26 PsiBlast_CBE 63.9236% -63 - C5 -3LSS 5.6 ?
11 PsiBlast_PDB 63.5836% -57 - C5 -3QO8 7.1 SYSC_CANAL
48 HHSearch 63.5138% -64 - C5 -3ERR 6.1 DYHC1_MOUSE (first)
14 PsiBlast_PDB 62.5636% -59 - C5 -3LSS 6.4 ?
12 PsiBlast_PDB 61.5138% -57 - C5 -3ERR 6.1 DYHC1_MOUSE (first)
25 PsiBlast_CBE 60.2138% -58 - C5 -3ERR 5.9 SYS_THET2