@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2751: (2016-04-06 )
MKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIMKDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSNIEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIVLVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEIGRFTTVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMNYLMQIMMAIIIGGMLMMMASRALISLKRITEVLETEPDITYNENAPEQDLEGTVEFRNVSFKYDGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGGTNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHGKKDATAEEMEHASKIAQAKEFIDKQAKLYEAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKEALNKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENETYREIYDTQKGKEVTA

Atome Classification :

(53 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4K8O)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_B_10(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_B_8(1XFA)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_C_11(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_D_12(1R0Z)

[Raw transfer]




ATP_A_9(1R0Z)
CFTR_MOUSE
[Raw transfer]




ATP_A_7(1XFA)
CFTR_MOUSE
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ATP_B_6(1R10)

[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




2 PsiBlast_PDB 91.1341%-109 - C2 -3QF4 - ? -
3 PsiBlast_PDB 90.5541%-108 - C2 -4Q4A - ? -
1 PsiBlast_PDB 90.5341%-104 - C2 -4Q4J - ? -
4 PsiBlast_PDB 89.7041%-106 - C2 -4Q4H - ? -
104 HHSearch 73.6727%-100 - C2 -3WMG - ? -
123 Fugue 72.6527% -97 - C2 -3B60 - MSBA_SALTY -
101 HHSearch 71.5427% -95 - C2 -3B60 - MSBA_SALTY -
103 HHSearch 71.2028%-100 - C2 -3ZDQ - ABCBA_HUMAN -
9 PsiBlast_PDB 69.6131%-101 - C2 -4AYX - ABCBA_HUMAN -
10 PsiBlast_PDB 68.9231% -99 - C2 -3ZDQ - ABCBA_HUMAN -
21 PsiBlast_CBE 68.3032% -94 - C2 -2ONJ - Y1866_STAAM -
11 PsiBlast_PDB 67.9831%-102 - C2 -4AYW - ABCBA_HUMAN -
22 PsiBlast_CBE 67.5232% -93 - C2 -2HYD - Y1866_STAAM -
5 PsiBlast_PDB 67.3232% -92 - C2 -2HYD - Y1866_STAAM -
8 PsiBlast_PDB 67.0431% -98 - C2 -4AYT - ABCBA_HUMAN -
6 PsiBlast_PDB 67.0432% -93 - C2 -2ONJ - Y1866_STAAM -
17 PsiBlast_PDB 66.9528% -87 - C2 -3B60 - MSBA_SALTY -
18 PsiBlast_PDB 66.3829% -94 - C2 -4F4C - PGP1_CAEEL -
125 Fugue 62.7125% -96 - C2 -4F4C - PGP1_CAEEL -
7 PsiBlast_PDB 56.2532% -91 - C2 -4A82 - Y1866_STAAM -
110 HHSearch 52.8441% -71 - C2 -2FF7 6.1
60 PsiBlast_CBE 50.9033% -74 - C2 -2IXE 7.0
63 PsiBlast_CBE 50.5533% -71 - C2 -2IXF 6.9 TAP1_RAT
71 PsiBlast_CBE 50.3933% -68 - C2 -2IXG 6.8
66 PsiBlast_CBE 50.3533% -73 - C2 -4K8O 6.4
108 HHSearch 49.5733% -63 - C2 -2IXE 7.0 TAP1_RAT
65 PsiBlast_CBE 49.3333% -69 - C2 -2IXF 6.6 TAP1_RAT
61 PsiBlast_CBE 49.2633% -66 - C2 -2IXE 7.0 TAP1_RAT
62 PsiBlast_CBE 49.2533% -67 - C2 -2IXF 7.0
64 PsiBlast_CBE 48.5933% -71 - C2 -2IXF 6.6 TAP1_RAT
59 PsiBlast_CBE 47.6736% -64 - C2 -1JJ7 5.9
56 PsiBlast_CBE 45.3237% -67 - C2 -3VX4 6.1 ?
107 HHSearch 43.6236% -67 * C2 *3VX4 6.6 ?
57 PsiBlast_CBE 43.5737% -68 - C2 -3VX4 6.7 ?
53 PsiBlast_CBE 43.0038% -61 - C2 -1MV5 4.2 LMRA_LACLA
54 PsiBlast_CBE 40.5138% -51 - C2 -1MV5 4.5 LMRA_LACLA
55 PsiBlast_CBE 40.2438% -54 - C2 -1MV5 6.2 LMRA_LACLA
52 PsiBlast_CBE 39.5038% -53 - C2 -1MV5 3.1
77 PsiBlast_CBE 31.5432% -53 - C2 -4YMU 4.3 ?
74 PsiBlast_CBE 31.0232% -53 - C2 -4YMV 4.8 ?
75 PsiBlast_CBE 30.6632% -55 - C2 -4YMV 4.0 ?
76 PsiBlast_CBE 30.4132% -53 - C2 -4YMU 4.8 ?
80 PsiBlast_CBE 30.3232% -49 - C2 -3C4J 4.1 ?
93 PsiBlast_CBE 29.8132% -51 - C2 -2OLJ 3.9 ?
81 PsiBlast_CBE 29.3932% -46 - C2 -3C4J 4.5 ?
92 PsiBlast_CBE 27.9832% -46 - C2 -2OLJ 3.6 ?
96 PsiBlast_CBE 25.7431% -49 - C2 -1R0Z 3.4 CFTR_MOUSE
95 PsiBlast_CBE 25.4931% -52 - C2 -1R0Z 3.7 CFTR_MOUSE
94 PsiBlast_CBE 25.1831% -48 - C2 -1R0Z 3.8
98 PsiBlast_CBE 24.8731% -48 - C2 -1XFA 4.0
100 PsiBlast_CBE 24.5731% -50 - C2 -1R10 3.5
97 PsiBlast_CBE 23.8531% -48 - C2 -1R0Z 3.5 CFTR_MOUSE
99 PsiBlast_CBE 23.8231% -49 - C2 -1XFA 4.7 CFTR_MOUSE