@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2752: (2016-04-07 )
MKEFKQISRFFWHYLRGYKPQLFVILIAVVFATYLQVKAPQYIGNAVQELGDYVVNLMQTGVDDKSDFIHIIWMLILCYVLLAAATFIQSIIMTGVAGKSTNRMRIGLFRKMEKLSIRFFDSRNDGEMLSRFTSDLDNISNTLNQALIQVLSNVALMIGVIIMMFQQNVELAFVTLISAPFAIIIATVIIRKARKFVDVQQDELGVLNGYIDEKISGQKIIITNGLEEETIDGFVKQNNIVKNATYKGQVYSGLLFPMMQGISLLNTAIVIFFGGWLALNGDLERTAALGLIVMFVQYSQQFYMPLTQISSQYSLLQLAITGARRVSEVFAEEEEVERENLQTIDGINKGVKLDHVDFAYDPAKPVLKDVSIDVSKGKMVALVGPTGSGKTTVMNLLNRFYNVDGGAILFDDIDIRDIRLDSLRKQVGIVLQDSVLFTGTIRDNIVFGKPEASDDEVINAAKQANIHDFIMNLEKGYETEISDENNIFSVGQKQLMSIARTIITNPSLLILDEATSNVDTVTESRIQKAMDNVISGRTSFVIAHRLKTILDADHIVVLHQGEVIEQGNHDELMKAEGFYSELYHNQFVIE

Atome Classification :

(60 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(4K8O)

[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_A_2(5DGX)
?
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ADP_B_8(1MV5)
LMRA_LACLA
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ADP_D_10(1MV5)

[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




AGS_A_3(4S0F)
?
[Raw transfer]




1 PsiBlast_PDB 88.6540%-122 - C2 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 88.2140%-117 - C2 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 88.0140%-121 - C2 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 87.6340%-119 - C2 -4Q4J - Y288_THEMA -
11 PsiBlast_PDB 76.4131% -96 - C2 -3B60 - MSBA_SALTY -
22 PsiBlast_CBE 76.2632%-100 - C2 -2HYD 4.6 Y1866_STAAM
23 PsiBlast_CBE 75.8831% -95 - C2 -3B60 - MSBA_SALTY -
5 PsiBlast_PDB 75.8732% -98 - C2 -2HYD 4.6 Y1866_STAAM
80 Fugue 75.8231% -96 - C2 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 75.6832%-101 - C2 -2ONJ 6.2 Y1866_STAAM
24 PsiBlast_CBE 75.6131% -95 - C2 -3B60 - MSBA_SALTY -
6 PsiBlast_PDB 75.3832%-100 - C2 -2ONJ 6.2 Y1866_STAAM
25 PsiBlast_CBE 75.1731% -95 - C2 -3B60 - MSBA_SALTY -
90 HHSearch 74.8331% -97 - C2 -3B60 - MSBA_SALTY -
91 HHSearch 74.5130%-102 - C2 -3ZDQ - ABCBA_HUMAN -
15 PsiBlast_PDB 73.7329%-106 - C2 -4RY2 - ? -
16 PsiBlast_PDB 72.1329% -94 - C2 -4S0F 3.2 ?
83 Fugue 68.7227%-100 - C2 -4F4C - PGP1_CAEEL -
92 HHSearch 68.5927% -99 - C2 -3WMG - ? -
20 PsiBlast_PDB 68.5630% -95 - C2 -4AYW 5.1 ABCBA_HUMAN
18 PsiBlast_PDB 68.1530% -90 - C2 -4AYX 5.4 ABCBA_HUMAN
17 PsiBlast_PDB 65.5830% -87 - C2 -4AYT 6.2 ABCBA_HUMAN
35 PsiBlast_CBE 53.1041% -92 - C2 -3NH9 6.4
34 PsiBlast_CBE 53.0341% -95 - C2 -3NHA 6.7
33 PsiBlast_CBE 52.0641% -95 - C2 -3NHB 6.6
45 PsiBlast_CBE 50.4742%-103 - C2 -3B5J 6.7
97 HHSearch 50.4537% -89 - C2 -2IXE 7.3 TAP1_RAT
42 PsiBlast_CBE 50.2242% -97 - C2 -2FF7 6.6
73 PsiBlast_CBE 49.9837%-100 - C2 -4K8O 6.6
57 PsiBlast_CBE 49.8141%-100 - C2 -1XEF 6.7 HLYBP_ECOLX
58 PsiBlast_CBE 49.7641% -98 - C2 -1XEF 6.6 HLYBP_ECOLX
64 PsiBlast_CBE 49.7434% -94 - C2 -3VX4 6.3 ?
59 PsiBlast_CBE 49.6241% -99 - C2 -1XEF 6.3 HLYBP_ECOLX
44 PsiBlast_CBE 49.4742%-103 - C2 -2PMK 6.7
71 PsiBlast_CBE 49.2938%-101 - C2 -2IXE 6.7
67 PsiBlast_CBE 49.2638% -97 - C2 -2IXF 7.3 TAP1_RAT
48 PsiBlast_CBE 49.0141% -96 - C2 -2FGK 6.5 HLYBP_ECOLX
65 PsiBlast_CBE 48.6234% -94 - C2 -3VX4 6.6 ?
55 PsiBlast_CBE 48.3941% -95 - C2 -2FFA 6.5
51 PsiBlast_CBE 48.2841% -98 - C2 -2FGJ 6.4
74 PsiBlast_CBE 48.0934% -92 - C2 -1JJ7 6.2
46 PsiBlast_CBE 47.9641% -95 - C2 -2FGK 6.8
54 PsiBlast_CBE 47.9441% -95 - C2 -2FGJ 6.4 HLYBP_ECOLX
95 HHSearch 47.8834% -90 - C2 -3VX4 6.6 ?
52 PsiBlast_CBE 47.7141% -92 - C2 -2FGJ 6.1 HLYBP_ECOLX
56 PsiBlast_CBE 47.5241% -95 - C2 -1XEF 6.7
72 PsiBlast_CBE 47.4538% -93 - C2 -2IXE 7.0 TAP1_RAT
70 PsiBlast_CBE 47.4338% -92 - C2 -2IXG 6.7
49 PsiBlast_CBE 47.4241% -94 - C2 -2FGK 6.5 HLYBP_ECOLX
66 PsiBlast_CBE 47.3238% -97 - C2 -2IXF 7.3
47 PsiBlast_CBE 46.9741% -94 - C2 -2FGK 6.0 HLYBP_ECOLX
69 PsiBlast_CBE 46.7438% -96 - C2 -2IXF 6.9 TAP1_RAT
98 HHSearch 46.6239% -90 - C2 -1MV5 6.7 LMRA_LACLA
68 PsiBlast_CBE 46.5238% -97 - C2 -2IXF 7.1 TAP1_RAT
53 PsiBlast_CBE 46.4441% -91 - C2 -2FGJ 6.9 HLYBP_ECOLX
37 PsiBlast_CBE 46.4341% -95 - C2 -5DGX 6.6 ?
39 PsiBlast_CBE 46.1338% -97 - C2 -1MV5 6.1 LMRA_LACLA
41 PsiBlast_CBE 45.5638% -89 - C2 -1MV5 6.7 LMRA_LACLA
40 PsiBlast_CBE 44.9238% -87 - C2 -1MV5 6.4 LMRA_LACLA
38 PsiBlast_CBE 39.8638% -88 - C2 -1MV5 5.0