@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2756: (2016-04-07 )
MTKTLVLAEKPSVGKDIGRVLGAKQGKNGYLEGGKYVVTWALGHLVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPIKQTRKQYETVKKLMNRTDITTIVIATDAGREGELVARWIIDYAKIKKPLKRLWISSVTDKAIREGFEHLKPGKAYENLYHSAVARSEADWVVGINATRALTTKYNAQLSCGRVQTPTLAMIQHREEEIRNFKSREYYGITALTEQESFTWNNGQTFDKALAEKLVKSLQGENAVITDVSMKEKKTFSPGLYDLTELQRDANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRFISTDIVPTLKERLVACGVGENAKAARQISVKPIKANKSFVDNSKVSDHHAIIPTEQPVSLGDLSDKERKIYDLVVKRFLAVLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIYGESREPDQLTKMKKGDTIPVKRINLETGKTKPPARFDEATLLSAMENPSKYMETTNKALAKTLGETGGLGTVATRADIIEKLFNSFSLEKQGKDIQITSKGRQLLELVPEDLKSPELTARWEQKLSKIAKGELDYRKFTAEMRDYAKKAVTEIKQNDKKFRHDNITSQKCPDCGKPMLKVKGKRGTMLVCQDRECGHRESVSRTTNARCPNCHKRMEMRGEGDKQIFVCVCGHREKLSAFQQRRDKQKNKNVSKTDVAKFMKKQNKQEDEPFNNPMAEALAKLKLDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_1(2O5C)
TOP3_ECOLI
[Raw transfer]
-
NACID_D_2(2O5E)
TOP3_ECOLI
[Raw transfer]
-
NACID_B_1(1I7D)
TOP3_ECOLI
[Raw transfer]
-
NACID_D_2(2O54)
TOP3_ECOLI
[Raw transfer]
-
NACID_C_1(2O59)
TOP3_ECOLI
[Raw transfer]
-
NACID_B_1(1I7D)
TOP3_ECOLI
[Raw transfer]
-
NACID_D_2(2O19)
TOP3_ECOLI
[Raw transfer]
-
NACID_C_1(2O54)
TOP3_ECOLI
[Raw transfer]
-
NACID_D_2(2O5C)
TOP3_ECOLI
[Raw transfer]
-
NACID_C_1(2O5E)
TOP3_ECOLI
[Raw transfer]
-
NACID_D_2(2O59)
TOP3_ECOLI
[Raw transfer]
-
NACID_C_1(2O19)
TOP3_ECOLI
[Raw transfer]
-
26 HHSearch 91.9033% -66 - C2 -1I7D 18.0 TOP3_ECOLI
23 PsiBlast_CBE 89.2533% -68 - C2 -2O59 17.3 TOP3_ECOLI
2 PsiBlast_PDB 89.2033% -73 - C2 -2O19 13.4 TOP3_ECOLI
22 PsiBlast_CBE 88.8533% -69 - C2 -2O5C 11.9 TOP3_ECOLI
7 PsiBlast_PDB 88.8233% -70 - C2 -1I7D 18.0 TOP3_ECOLI
24 PsiBlast_CBE 88.6733% -68 - C2 -2O54 17.1 TOP3_ECOLI
3 PsiBlast_PDB 88.6633% -74 - C2 -2O54 13.2 TOP3_ECOLI
6 PsiBlast_PDB 88.6333% -71 - C2 -2O5E 14.0 TOP3_ECOLI
21 PsiBlast_CBE 88.2833% -67 - C2 -2O5E 12.4 TOP3_ECOLI
5 PsiBlast_PDB 88.2533% -68 - C2 -2O5C 12.5 TOP3_ECOLI
25 PsiBlast_CBE 87.8033% -69 - C2 -2O19 16.8 TOP3_ECOLI
1 PsiBlast_PDB 87.4133% -68 - C2 -1D6M - TOP3_ECOLI -
4 PsiBlast_PDB 87.4033% -74 - C2 -2O59 14.1 TOP3_ECOLI
54 Fugue 78.8226% -47 - C2 -4CGY - TOP3A_HUMAN -
20 PsiBlast_PDB 76.0723% -45 - C2 -4CGY - TOP3A_HUMAN -
28 HHSearch 76.0125% -62 * C2 *1MW9 - TOP1_ECOLI -
8 PsiBlast_PDB 75.5827% -53 - C2 -2GAI - TOP1_THEMA -
9 PsiBlast_PDB 75.4327% -54 - C2 -2GAJ - TOP1_THEMA -
27 HHSearch 74.2826% -47 - C2 -2GAI - TOP1_THEMA -
52 Fugue 73.1926% -38 - C2 -2GAI - TOP1_THEMA -