@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2757: (2016-04-07 )
MIEQARAILQQNFGYQDFRNGQVDVISKLCAGEDTLAIMPTGGGKSLCYQIPALLFDGLTIVVSPLISLMKDQVDALVSEGIAATFINSTLTNREIDIRLDAAFSGELKMLYIAPERIETPGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDSLDKMTRRPLVIALTATATQAVSDDICRLLKIRADSVVKTGFSRDNLAFQVVKGQDKDKYLIDYLTKNVTESGIIYASTRKEVERLHSFLQKKGVESGMYHGGMTDLARKDWQEKFLYDDIRVIVATNAFGMGINKSNVRFVIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFSPQDSRIQQFLIEQSEMDDERKQNEFAKLRQMTGYGYTEICLQKYIVQYFGDDEPNCGKCSNCLDTREATDITILAQQVFSCIKRMGERFGKVLIAKVLTGSADQKVKDWRFDELSTYGLMKDASQKDVLQLIDYLTAEKYLQPTDSQFPSLKLTDRAVSVLRGELKVERKQAKRAEKVKIDVNSDLFEKLREVRRELAAKHKVPPYIIFSDETLREMCAYMPQTEDALLEVKGIGAMKRDKYGAEFLAVLQQEASK

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_A_5(1OYY)
RECQ_ECOLI
[Raw transfer]



ADP_A_3(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_B_5(4Q47)
?
[Raw transfer]



ADP_A_3(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_B_10(2V1X)
RECQ1_HUMAN
[Raw transfer]



ADP_A_6(4O3M)
BLM_HUMAN
[Raw transfer]



ADP_A_3(4Q47)
?
[Raw transfer]
2 PsiBlast_PDB 89.5241%-108 - C4 -4TMU - ? -
46 HHSearch 88.5942%-106 - C4 -1OYW - RECQ_ECOLI -
6 PsiBlast_PDB 87.8234% -93 - C4 -4CDG - BLM_HUMAN -
23 PsiBlast_CBE 87.7634% -94 - C4 -4CDG - BLM_HUMAN -
3 PsiBlast_PDB 87.0741%-105 - C4 -1OYW - RECQ_ECOLI -
1 PsiBlast_PDB 86.6842%-104 - C4 -1OYY 7.2 RECQ_ECOLI
8 PsiBlast_PDB 86.1234% -89 - C4 -4CGZ - BLM_HUMAN -
7 PsiBlast_PDB 84.7834% -86 - C4 -4O3M 7.7 BLM_HUMAN
5 PsiBlast_PDB 84.6039% -98 - C4 -4Q48 - ? -
21 PsiBlast_CBE 84.2239% -96 - C4 -4Q48 - ? -
22 PsiBlast_CBE 83.7639% -99 - C4 -4Q47 5.7 ?
4 PsiBlast_PDB 83.5539%-101 - C4 -4Q47 4.1 ?
47 HHSearch 76.7530%-101 - C4 -2V1X 7.3 RECQ1_HUMAN
10 PsiBlast_PDB 75.8136%-115 - C4 -2V1X 7.3 RECQ1_HUMAN
25 PsiBlast_CBE 75.7836%-113 - C4 -4U7D - RECQ1_HUMAN -
9 PsiBlast_PDB 75.5536%-113 - C4 -4U7D - RECQ1_HUMAN -
11 PsiBlast_PDB 75.5336%-114 - C4 -2WWY - RECQ1_HUMAN -
24 PsiBlast_CBE 75.4136%-113 - C4 -4U7D - RECQ1_HUMAN -
26 PsiBlast_CBE 75.3036%-111 - C4 -4U7D - RECQ1_HUMAN -
27 PsiBlast_CBE 74.9036%-114 - C4 -2WWY - RECQ1_HUMAN -
28 PsiBlast_CBE 74.7236%-113 - C4 -2V1X 6.8 RECQ1_HUMAN