@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2774: (2016-04-07 )
MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITGGENRKLMIEHLEEVGMDESYLAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR

Atome Classification :

(61 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




4 PsiBlast_PDB 94.3938%-120 - C1 -3TIF 4.9 Y796_METJA
1 PsiBlast_PDB 94.2939%-120 - C1 -1L2T - Y796_METJA -
21 PsiBlast_CBE 93.5539%-117 - C1 -1L2T 5.1 Y796_METJA
23 PsiBlast_CBE 91.7838%-122 - C1 -3TIF 4.8 Y796_METJA
5 PsiBlast_PDB 87.4939%-115 - C1 -1F3O 4.4 Y796_METJA
116 HHSearch 85.5738%-113 - C1 -2PCJ - LOLD_AQUAE -
2 PsiBlast_PDB 85.0739%-103 - C1 -2PCJ - LOLD_AQUAE -
3 PsiBlast_PDB 84.4939%-105 - C1 -2PCL - LOLD_AQUAE -
22 PsiBlast_CBE 84.2639%-105 - C1 -2PCJ - LOLD_AQUAE -
121 HHSearch 82.0832%-118 - C1 -1B0U - HISP_SALTY -
71 PsiBlast_CBE 79.7131%-109 - C1 -3FVQ 6.8 FBPC_NEIG1
107 HHSearch 77.6732%-103 - C1 -3RLF - MALK_ECOLI -
101 HHSearch 77.5033% -98 - C1 -1Z47 - ? -
41 PsiBlast_CBE 76.6632% -91 - C1 -4KI0 - ? -
72 PsiBlast_CBE 76.3131%-105 - C1 -3FVQ 6.1 FBPC_NEIG1
77 PsiBlast_CBE 76.1331%-109 - C1 -2PMK 5.4
50 PsiBlast_CBE 76.1032% -90 - C1 -3PUW - MALK_ECOLI -
74 PsiBlast_CBE 75.6731%-110 - C1 -1B0U 5.2 HISP_SALTY
81 PsiBlast_CBE 75.6631%-106 - C1 -2FGK 5.9 HLYBP_ECOLX
102 HHSearch 75.6333%-103 - C1 -3FVQ 6.1 FBPC_NEIG1
75 PsiBlast_CBE 75.0131%-109 - C1 -2FF7 5.4
33 PsiBlast_CBE 74.8731%-103 - C1 -2OLK 5.3 ?
79 PsiBlast_CBE 74.8631%-106 - C1 -2FGK 5.3 HLYBP_ECOLX
9 PsiBlast_PDB 74.2531%-103 - C1 -2OLK 5.4 ?
78 PsiBlast_CBE 74.2431%-107 - C1 -2FGK 6.1
6 PsiBlast_PDB 73.6131%-102 - C1 -4U00 4.9 ?
11 PsiBlast_PDB 73.5631% -98 - C1 -2Q0H 5.7 ?
82 PsiBlast_CBE 72.7331%-107 - C1 -2FFB 5.4
80 PsiBlast_CBE 72.5531%-106 - C1 -2FGK 5.8 HLYBP_ECOLX
88 PsiBlast_CBE 72.4331%-108 - C1 -2FGJ 6.1 HLYBP_ECOLX
91 PsiBlast_CBE 72.4231%-109 - C1 -1XEF 5.7
27 PsiBlast_CBE 72.1631%-103 - C1 -3C4J 4.6 ?
86 PsiBlast_CBE 71.9431%-111 - C1 -2FGJ 5.7
35 PsiBlast_CBE 71.8031% -96 - C1 -2OLJ 4.4 ?
92 PsiBlast_CBE 71.7631%-120 - C1 -1XEF 5.8 HLYBP_ECOLX
93 PsiBlast_CBE 71.6131%-111 - C1 -1XEF 5.8 HLYBP_ECOLX
13 PsiBlast_PDB 71.5631%-100 - C1 -3C41 5.8 ?
94 PsiBlast_CBE 71.2931%-110 - C1 -1XEF 5.5 HLYBP_ECOLX
83 PsiBlast_CBE 71.0931%-106 - C1 -3B5J 5.6
32 PsiBlast_CBE 70.5431% -99 - C1 -2OLK 4.6 ?
34 PsiBlast_CBE 70.4131%-103 - C1 -2OLK 4.8 ?
87 PsiBlast_CBE 70.3631%-112 - C1 -2FGJ 5.9 HLYBP_ECOLX
39 PsiBlast_CBE 70.2531%-100 - C1 -4YMU 5.1 ?
28 PsiBlast_CBE 70.0431%-101 - C1 -2Q0H 5.1 ?
36 PsiBlast_CBE 70.0331% -98 - C1 -3C41 5.7 ?
89 PsiBlast_CBE 69.9231%-108 - C1 -2FGJ 5.8 HLYBP_ECOLX
8 PsiBlast_PDB 69.6031%-106 - C1 -2OLJ 5.4 ?
90 PsiBlast_CBE 69.3531%-105 - C1 -2FFA 5.3
12 PsiBlast_PDB 68.2331% -97 - C1 -3C4J 5.7 ?
98 PsiBlast_CBE 67.3732%-100 - C1 -2HYD 4.7 Y1866_STAAM
96 PsiBlast_CBE 66.6932% -95 - C1 -2ONJ 5.2 Y1866_STAAM
95 PsiBlast_CBE 66.6032% -97 - C1 -2ONJ 5.2 Y1866_STAAM
38 PsiBlast_CBE 66.5031% -94 - C1 -4YMV 5.5 ?
67 PsiBlast_CBE 66.3733%-110 - C1 -4MKI 4.0 ECFA2_CALS4
97 PsiBlast_CBE 66.0832%-100 - C1 -2HYD 4.6 Y1866_STAAM
68 PsiBlast_CBE 65.9433%-112 - C1 -4MKI 2.1 ECFA2_CALS4
17 PsiBlast_PDB 65.7431% -97 - C1 -4YMU 5.2 ?
70 PsiBlast_CBE 64.7533% -98 - C1 -4HLU 5.6 ECFA1_THEMA
18 PsiBlast_PDB 63.0131% -97 - C1 -4YMV 5.1 ?
99 PsiBlast_CBE 56.0031%-100 - C1 -3VX4 4.7 ?
100 PsiBlast_CBE 53.6331% -99 - C1 -3VX4 4.8 ?