@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2785: (2016-04-07 )
MTDRKNLTTNQGVPVGDNQNSMTAGRKGPTLIEDYVLIEKLAHFDRERVPERVVHARGAGAHGKFVTKKSMKKYTMAKFLQEEGTETEVFARFSTVIHGQHSPETLRDPRGFSVKFYTEEGNYDFVGNNLPVFFIRDAIKFPDVIHSLKPDPRTNIQDGNRYWDFFSLTPEATTMIMYLFSDEGTPASYREVRGSSVHAFKWINEEGKTVYVKLRWVPKAGIVNLSTEQASQIQAKEFNHASRDLYEAIENGDYPEWDLYVQVLDPKDLDSFDFNPLDATKDWFEDVFPYEHVGTMTLDRNPDNIFAETESVGFNPGVLVRGMLPSEDRLLQGRLFSYSDTQRHRVGPNYLQLPINSPKAPVANNQRDGHMPFKQQTSSINYEPNSYDTEPKENPAFIEPEQEIRGDISGRLIAEKPNNFGHAKEVWDRYSNAERAALVKNIVDDWSQVREDIKIRNLRNFYQVDPEFASRVAAGTGINLEEHVTDLK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_3(8CAT)
CATA_BOVIN
[Raw transfer]



HEM_A_3(8CAT)
CATA_BOVIN
[Raw transfer]



HEM_A_3(7CAT)
CATA_BOVIN
[Raw transfer]



HEM_B_5(7CAT)
CATA_BOVIN
[Raw transfer]



HEM_A_4(1QWL)
CATA_HELPY
[Raw transfer]



HEM_B_5(8CAT)
CATA_BOVIN
[Raw transfer]



HEM_A_2(1GWE)
CATA_MICLU
[Raw transfer]
23 PsiBlast_CBE 98.2968% -49 - C8 -2J2M - ? -
1 PsiBlast_PDB 98.1568% -49 - C8 -2J2M - ? -
113 HHSearch 98.1269% -49 - C8 -2J2M - ? -
22 PsiBlast_CBE 97.9368% -49 - C8 -2J2M - ? -
21 PsiBlast_CBE 97.1268% -49 - C8 -2J2M - ? -
32 PsiBlast_CBE 96.0459% -46 - C8 -4QOP - ? -
30 PsiBlast_CBE 95.8159% -46 - C8 -4QOP - ? -
40 PsiBlast_CBE 95.7559% -46 - C8 -4QOM - ? -
39 PsiBlast_CBE 95.7559% -46 - C8 -4QOM - ? -
7 PsiBlast_PDB 95.6859% -46 - C8 -4QOQ - ? -
3 PsiBlast_PDB 95.6559% -46 - C8 -4QOM - ? -
6 PsiBlast_PDB 95.6359% -45 - C8 -4QOP - ? -
28 PsiBlast_CBE 95.4959% -46 - C8 -4QOQ - ? -
38 PsiBlast_CBE 95.4659% -44 - C8 -4QON - ? -
29 PsiBlast_CBE 95.4359% -46 - C8 -4QOQ - ? -
2 PsiBlast_PDB 95.3759% -45 - C8 -4QOL - ? -
35 PsiBlast_CBE 95.3159% -46 - C8 -4QOO - ? -
27 PsiBlast_CBE 95.3059% -46 - C8 -4QOQ - ? -
43 PsiBlast_CBE 95.2659% -46 - C8 -4QOL - ? -
8 PsiBlast_PDB 95.2359% -46 - C8 -4QOR - ? -
63 PsiBlast_CBE 86.8844% -41 - C8 -8CAT 11.8 CATA_BOVIN
14 PsiBlast_PDB 86.5544% -43 - C8 -7CAT 11.7 CATA_BOVIN
64 PsiBlast_CBE 86.5344% -43 - C8 -7CAT 11.7 CATA_BOVIN
101 Fugue 84.9944% -46 - C8 -8CAT 11.4 CATA_BOVIN
15 PsiBlast_PDB 84.7944% -42 - C8 -8CAT 11.4 CATA_BOVIN
118 HHSearch 83.1940% -40 - C8 -1QWL 12.5 CATA_HELPY
111 HHSearch 80.6036% -36 - C8 -1GWE 12.6 CATA_MICLU