@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2801: (2016-04-07 )
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RFW_C_10(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_A_6(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_D_12(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_B_8(4UTW)
NANE_CLOPE
[Raw transfer]




LRY_A_3(4UTU)
NANE_CLOPE
[Raw transfer]




LRY_B_5(4UTU)
NANE_CLOPE
[Raw transfer]




16G_A_3(3IGS)
NANE2_SALTY
[Raw transfer]




16G_A_3(3IGS)
NANE2_SALTY
[Raw transfer]




PEG_A_3(3Q58)
NANE_SALTI
[Raw transfer]




PEG_A_3(3Q58)
NANE_SALTI
[Raw transfer]




24 PsiBlast_CBE 97.2750%-101 - C2 -4UTW 4.0 NANE_CLOPE
28 HHSearch 97.2453%-105 - C2 -1Y0E - NANE_STAAN -
3 PsiBlast_PDB 97.1150%-103 - C2 -4UTT - NANE_CLOP1 -
1 PsiBlast_PDB 96.9954%-108 - C2 -1Y0E - NANE_STAAN -
2 PsiBlast_PDB 96.6950%-102 - C2 -4UTW 3.7 NANE_CLOPE
25 PsiBlast_CBE 96.5550%-103 - C2 -4UTT - NANE_CLOP1 -
26 PsiBlast_CBE 96.3950%-102 - C2 -4UTT - NANE_CLOP1 -
27 PsiBlast_CBE 96.2550%-102 - C2 -4UTU 5.0 NANE_CLOPE
22 PsiBlast_CBE 95.7750%-103 - C2 -4UTT - NANE_CLOP1 -
21 PsiBlast_CBE 95.5450%-101 - C2 -4UTW 3.8 NANE_CLOPE
4 PsiBlast_PDB 95.3550% -99 - C2 -4UTU 4.9 NANE_CLOPE
23 PsiBlast_CBE 94.8550%-101 - C2 -4UTW 4.0 NANE_CLOPE
5 PsiBlast_PDB 90.6744%-103 - C2 -1YXY - NANE_STRP1 -
29 HHSearch 89.0744%-102 - C2 -1YXY - NANE_STRP1 -
7 PsiBlast_PDB 83.4733%-100 - C2 -3Q58 2.5 NANE_SALTI
31 HHSearch 83.2036% -99 - C2 -3Q58 2.5 NANE_SALTI
30 HHSearch 83.1239%-101 - C2 -3IGS 2.5 NANE2_SALTY
6 PsiBlast_PDB 82.9837%-100 - C2 -3IGS 2.5 NANE2_SALTY
32 HHSearch 61.0314%-105 * C2 *3TSM - TRPC_BRUA2 -
42 HHSearch 59.7820% -83 - C2 -2Z6I - ? -