@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2802: (2016-04-07 )
MNPEQFQMALAEKGIELSDDQMKQFHDYFEMLVEWNEKMNLTAITDEKEVYLKHFYDSISAAFYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSLKKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCMPLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFSLPVEESERNIYVITKTKETPNKYPRKPGTPNKLPIE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_B_5(3G8B)
RSMG_THET8
[Raw transfer]
23 HHSearch 97.1670%-108 - C1 -1XDZ - RSMG_BACSU -
1 PsiBlast_PDB 96.8569%-108 - C1 -1XDZ - RSMG_BACSU -
15 PsiBlast_CBE 79.3236% -96 - C1 -3G8B 7.4 RSMG_THET8
5 PsiBlast_PDB 79.2236% -99 - C1 -3G8B - RSMG_THET8 -
43 Fugue 71.9230%-116 - C1 -1JSX - RSMG_ECOLI -
6 PsiBlast_PDB 71.7430%-127 - C1 -1JSX - RSMG_ECOLI -
25 HHSearch 70.5531%-125 - C1 -1JSX - RSMG_ECOLI -
49 Fugue 43.7518% -65 - C1 -1JG1 - PIMT_PYRFU -
29 HHSearch 42.8518% -82 - C1 -2B3T - PRMC_ECOLI -
41 HHSearch 42.1318% -82 - C1 -3BUS - REBMT_NOCAE -
31 HHSearch 42.0319% -78 * C1 *1XXL - YCGJ_BACSU -
44 Fugue 40.7612% -57 - C1 -3OFK - ? -
32 HHSearch 40.6921% -76 - C1 -3MQ2 - KAMB_STRSD -
21 PsiBlast_CBE 40.6436% 6 - C1 -3G89 - RSMG_THET8 -
17 PsiBlast_CBE 40.4636% 6 - C1 -3G8A - RSMG_THET8 -
2 PsiBlast_PDB 40.1736% 6 - C1 -3G88 - RSMG_THET8 -
16 PsiBlast_CBE 40.0536% 6 - C1 -3G8A - RSMG_THET8 -
20 PsiBlast_CBE 39.7136% 8 - C1 -3G8A - RSMG_THET8 -
26 HHSearch 39.4516% -81 - C1 -3DH0 - ? -
3 PsiBlast_PDB 39.3936% 8 - C1 -3G89 - RSMG_THET8 -