@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2810: (2016-04-07 )
MQTYDAGTFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMVAFMPCNPSVGGPAKGVVVREIDALGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENITLRQGLVDRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQPSVKLSEHLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHPRAFSFDTVEMLLDQLPCWLTYTNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFLEPEGKNTEEVYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGYEEAAGQGLMAGINAARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLKEIGSGELKDGILAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILLVYIEQGKIAKISK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_4(2ZXH)
MNMG_AQUAE
[Raw transfer]




FAD_A_3(2ZXH)
MNMG_AQUAE
[Raw transfer]




23 PsiBlast_CBE 96.3951% -65 - C4 -2ZXH 11.1 MNMG_AQUAE
3 PsiBlast_PDB 95.2751% -64 - C4 -2ZXH 12.7 MNMG_AQUAE
22 PsiBlast_CBE 94.6451% -62 - C4 -2ZXI - MNMG_AQUAE -
21 PsiBlast_CBE 94.6251% -63 - C4 -2ZXI - MNMG_AQUAE -
26 PsiBlast_CBE 93.4949% -64 - C4 -3CP8 - MNMG_CHLTE -
4 PsiBlast_PDB 93.2549% -65 - C4 -3CP8 - MNMG_CHLTE -
85 HHSearch 93.0349% -62 - C4 -3CP8 - MNMG_CHLTE -
25 PsiBlast_CBE 93.0149% -67 - C4 -3CP8 - MNMG_CHLTE -
2 PsiBlast_PDB 88.1051% -69 - C4 -3CES - MNMG_ECOLI -
24 PsiBlast_CBE 88.0049% -63 - C4 -3CP8 - MNMG_CHLTE -
27 PsiBlast_CBE 86.7351% -65 - C4 -3G05 - MNMG_ECO57 -
5 PsiBlast_PDB 84.9551% -66 - C4 -3G05 - MNMG_ECO57 -
1 PsiBlast_PDB 82.6951% -69 - C4 -3CP2 - MNMG_ECOLI -
86 HHSearch 55.4226% -40 - C5 -3G5S - TRMFO_THET8 -
83 HHSearch 54.6250% 35 - C4 -3CES - MNMG_ECOLI -
89 HHSearch 48.6825% -53 - C4 -3F8D - ? -
97 HHSearch 46.7325% -54 - C4 -2CUL - ? -
108 Fugue 45.9219% -12 - C3 -4OPU - ? -
9 PsiBlast_PDB 45.9121% -58 - C4 -2CUL - ? -
100 HHSearch 44.8724% -54 - C4 -1HYU - AHPF_SALTY -