@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2811: (2016-04-07 )
MEFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSEAESHTIHYGHIKEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLRNGANLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRNLRQEILDALAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLRTASQGKILREGLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAGIRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNKTDLETKLDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSNVRHIALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLFNQFCLGK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_2(3GEH)
MNME_NOSS1
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GDP_A_3(2HJG)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCT)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]



GDP_D_4(2DYK)
?
[Raw transfer]



GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]



GDP_D_20(2GJ9)

[Raw transfer]



GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_C_3(2DYK)
?
[Raw transfer]



GDP_B_10(2GJA)

[Raw transfer]



GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]
45 Fugue 94.2040%-103 - C2 -1XZP - MNME_THEMA -
56 HHSearch 93.6541%-100 - C2 -1XZP - MNME_THEMA -
55 HHSearch 92.3044% -97 - C2 -3GEH 6.5 MNME_NOSS1
1 PsiBlast_PDB 92.1443%-100 - C2 -3GEH 6.5 MNME_NOSS1
2 PsiBlast_PDB 91.9941%-106 - C2 -1XZP - MNME_THEMA -
3 PsiBlast_PDB 91.3841%-108 - C2 -1XZQ - ? -
21 PsiBlast_CBE 86.4039%-109 - C2 -3GEI - MNME_CHLTE -
4 PsiBlast_PDB 86.3239%-105 - C2 -3GEE 5.3 MNME_CHLTE
5 PsiBlast_PDB 86.1439%-110 - C2 -3GEI 6.8 MNME_CHLTE
54 HHSearch 82.2638% -92 - C2 -3GEE 5.3 MNME_CHLTE
59 HHSearch 54.2229% -71 - C2 -3IEV - ERA_AQUAE -
60 HHSearch 52.3931% -81 - C2 -1MKY 5.4 DER_THEMA
71 HHSearch 51.5234% -58 - C2 -2DYK 6.8 ?
28 PsiBlast_CBE 50.9936% -64 - C2 -2DYK 6.3 ?
72 HHSearch 50.0638% -43 - C2 -2GJ8 7.3 MNME_ECOLI
17 PsiBlast_PDB 49.7736% -59 - C2 -2DYK 5.9 ?
51 Fugue 49.1417% -66 - C2 -1MKY - DER_THEMA -
58 HHSearch 48.7926% -55 - C2 -1WF3 - ERA_THET8 -
48 Fugue 48.4619% -75 - C2 -1M2O - SAR1_YEAST -
73 HHSearch 48.0423% -59 - C2 -2E87 - ? -
11 PsiBlast_PDB 43.8737% -68 - C2 -1MKY 6.5 DER_THEMA
13 PsiBlast_PDB 43.6034% -60 - C2 -4DCT 5.3 DER_BACSU
16 PsiBlast_PDB 43.1634% -49 - C2 -2HJG 6.0 DER_BACSU
12 PsiBlast_PDB 43.0934% -56 - C2 -4DCS 6.5 DER_BACSU
15 PsiBlast_PDB 42.4634% -53 - C2 -4DCV 6.0 DER_BACSU
24 PsiBlast_CBE 41.9253% -27 - C2 -2GJA 5.8
25 PsiBlast_CBE 41.9053% -32 - C2 -2GJ9 5.6
14 PsiBlast_PDB 41.8534% -46 - C2 -4DCU 6.5 DER_BACSU
9 PsiBlast_PDB 41.0953% -26 - C2 -2GJ8 5.5 MNME_ECOLI
7 PsiBlast_PDB 40.8653% -28 - C2 -2GJ9 5.0 MNME_ECOLI
8 PsiBlast_PDB 40.7353% -30 - C2 -2GJA 5.5 MNME_ECOLI
27 PsiBlast_CBE 40.7053% -30 - C2 -2GJ9 5.3 MNME_ECOLI
26 PsiBlast_CBE 40.5853% -30 - C2 -2GJ9 5.3 MNME_ECOLI