Study : Lmo2825 (atomeDB@cbs.cnrs.fr)


Main Binding Site Prediction:


Binding Site Prediction

Download fasta file
Download text file


Binding Site Number :C3_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)		Hydrophobicity
Score(FPocket)		Contacts Ligand/Receptor [<4A] in Site C3_S1
Complex: PLP_A_3(1BT4) / Model_2(1BT4/A) = [3.3] Download524.0916.05VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV
Complex: PLP_A_3(1BT4) / Model_38(1BT4/A) = [3.3] Download501.5616.05VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV
Complex: PLP_B_10(2BIG) / Model_33(2BIG/B) = [3.5] Download589.3815.67VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV
Complex: PLP_A_4(3E77) / Model_51(3E77/A) = [3.6] Download468.9921.55VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV
Complex: PLP_A_4(3E77) / Model_37(3E77/A) = [3.6] Download477.2021.55VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV
Consensus
[pKd Mean = 3.46]		-512
(s=43)		18
(s=2)		VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV