@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2825: (2016-04-07 )
VERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSELFQNILDDAESLIRELMEIPDNYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWAKKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDVAYLHVTTNNTIEGTAMFDVPDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLPSMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYDYIDQSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVKEAEANGFENLKGHRSVGGMRASLYNAFPIEGVEALIAFMEKFANARKGGEVRV

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_B_4(3QBO)
?
[Raw transfer]




PLP_A_2(1W3U)
SERC_BACCI
[Raw transfer]




PLP_B_11(2BIA)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI2)
SERC_BACAO
[Raw transfer]




PLP_A_10(1W23)
SERC_BACAO
[Raw transfer]




PLP_A_3(4AZK)
SERC_BACAO
[Raw transfer]




PLP_A_3(1BT4)
SERC_BACCI
[Raw transfer]




PLP_A_3(1BT4)
SERC_BACCI
[Raw transfer]




PLP_B_18(1W23)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI3)
SERC_BACAO
[Raw transfer]




PLP_A_3(2C0R)
SERC_BACCI
[Raw transfer]




PLP_B_5(4AZK)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI5)
SERC_BACAO
[Raw transfer]




PLP_B_4(2C0R)
SERC_BACCI
[Raw transfer]




PLP_B_11(2BI9)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI5)
SERC_BACAO
[Raw transfer]




PLP_A_3(2C0R)
SERC_BACCI
[Raw transfer]




PLP_A_3(2BIA)
SERC_BACAO
[Raw transfer]




PLP_A_10(1W23)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BIG)
SERC_BACAO
[Raw transfer]




PLP_A_4(3E77)
SERC_HUMAN
[Raw transfer]




PLP_A_4(3E77)
SERC_HUMAN
[Raw transfer]




PLP_A_3(2BI9)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BHX)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI3)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BHX)
SERC_BACAO
[Raw transfer]




PLP_A_3(3QBO)
?
[Raw transfer]




PLP_B_6(3E77)
SERC_HUMAN
[Raw transfer]




PLP_B_10(2BIE)
SERC_BACAO
[Raw transfer]




PLP_B_11(2BI1)
SERC_BACAO
[Raw transfer]




PLP_B_10(2BIG)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BIE)
SERC_BACAO
[Raw transfer]




PLP_A_3(2BI1)
SERC_BACAO
[Raw transfer]




MES_A_4(3M5U)
SERC_CAMJE
[Raw transfer]




PLP_A_3(1BJO)
SERC_ECOLI
[Raw transfer]




3 PsiBlast_PDB 95.5050% -98 - C3 -1W3U 4.3 SERC_BACCI
10 PsiBlast_PDB 95.1848%-103 - C3 -2BI3 5.1 SERC_BACAO
11 PsiBlast_PDB 95.0948%-104 - C3 -2BI5 4.9 SERC_BACAO
9 PsiBlast_PDB 95.0948%-104 - C3 -2BI2 - SERC_BACAO -
25 PsiBlast_CBE 95.0348%-106 - C3 -2BIA 3.9 SERC_BACAO
13 PsiBlast_PDB 94.7348%-104 - C3 -2BIA 4.7 SERC_BACAO
32 PsiBlast_CBE 94.5948%-105 - C3 -1W23 3.8 SERC_BACAO
8 PsiBlast_PDB 94.4648%-104 - C3 -2BI1 4.4 SERC_BACAO
7 PsiBlast_PDB 94.3948%-104 - C3 -2BHX 4.3 SERC_BACAO
2 PsiBlast_PDB 94.3550%-100 - C3 -1BT4 3.3 SERC_BACCI
12 PsiBlast_PDB 94.3148%-103 - C3 -2BI9 4.8 SERC_BACAO
27 PsiBlast_CBE 94.2548%-106 - C3 -2BI5 4.8 SERC_BACAO
15 PsiBlast_PDB 94.0048%-102 - C3 -4AZK 4.2 SERC_BACAO
34 PsiBlast_CBE 93.9848%-104 - C3 -2BIE 4.3 SERC_BACAO
16 PsiBlast_PDB 93.9348%-104 - C3 -2BIE 4.3 SERC_BACAO
21 PsiBlast_CBE 93.8550% -96 - C3 -2C0R 4.8 SERC_BACCI
30 PsiBlast_CBE 93.7948%-104 - C3 -2BI1 4.5 SERC_BACAO
26 PsiBlast_CBE 93.6748%-105 - C3 -2BI9 4.9 SERC_BACAO
22 PsiBlast_CBE 93.6652% -99 - C3 -3QBO 4.5 ?
6 PsiBlast_PDB 93.4748%-105 - C3 -1W23 3.9 SERC_BACAO
28 PsiBlast_CBE 93.4148%-105 - C3 -2BI3 4.6 SERC_BACAO
29 PsiBlast_CBE 93.3148%-105 - C3 -2BI2 4.6 SERC_BACAO
17 PsiBlast_PDB 93.2648%-104 - C3 -2BIG 4.6 SERC_BACAO
33 PsiBlast_CBE 93.1248%-104 - C3 -2BIG 3.5 SERC_BACAO
31 PsiBlast_CBE 93.0748%-105 - C3 -2BHX 4.5 SERC_BACAO
38 Fugue 92.8350%-100 - C3 -1BT4 3.3 SERC_BACCI
5 PsiBlast_PDB 92.7652% -98 - C3 -3QBO 3.9 ?
23 PsiBlast_CBE 92.7148%-104 - C3 -4AZK 4.2 SERC_BACAO
37 PsiBlast_CBE 92.5248%-101 - C3 -3E77 3.6 SERC_HUMAN
4 PsiBlast_PDB 92.2650% -96 - C3 -2C0R 4.6 SERC_BACCI
36 PsiBlast_CBE 92.2448%-104 - C3 -3E77 3.9 SERC_HUMAN
19 PsiBlast_PDB 90.7249% -97 - C3 -1BJO 4.7 SERC_ECOLI
51 HHSearch 90.2348% -94 - C3 -3E77 3.6 SERC_HUMAN
48 HHSearch 89.3848%-100 - C3 -1W23 3.9 SERC_BACAO
50 HHSearch 88.1451% -91 * C3 *2C0R 4.6 SERC_BACCI
49 HHSearch 84.5842% -93 - C3 -3M5U 2.1 SERC_CAMJE