@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2855: (2016-04-08 )
MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIGLSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLIHVLKVGRVLKQKPNNSK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PPV_A_4(4JG4)
RNPA_BACSU
[Raw transfer]




1 PsiBlast_PDB 96.7360%-105 - C2 -1A6F - RNPA_BACSU -
3 PsiBlast_PDB 94.4851% -93 - C2 -1D6T - RNPA_STAAU -
13 HHSearch 94.4252% -91 - C2 -1D6T - RNPA_STAAU -
2 PsiBlast_PDB 91.5260% -95 - C2 -4JG4 3.1 RNPA_BACSU
12 HHSearch 79.1931%-106 - C2 -1NZ0 - RNPA_THEMA -
5 PsiBlast_PDB 78.9632%-121 - C2 -3Q1Q - RNPA_THEMA -
6 PsiBlast_PDB 78.3132%-121 - C2 -3Q1R - RNPA_THEMA -
4 PsiBlast_PDB 76.4632%-112 - C2 -1NZ0 - RNPA_THEMA -
14 HHSearch 71.2126% -85 - C2 -2LJP - RNPA_ECOLI -
7 PsiBlast_PDB 67.1430% -81 - C2 -2LJP - RNPA_ECOLI -
25 Fugue 44.5623% -28 * C4 *1I35 - BYR2_SCHPO -
31 Fugue 41.9723% -48 - C4 -1YD0 - UVRC_THEMA -
30 Fugue 41.9513% 9 - C1 -4D50 - DOHH_HUMAN -
29 Fugue 36.8620% -36 - C3 -2CO5 - ? -
28 Fugue 35.8717% -32 - C2 -1E68 - ? -
10 PsiBlast_PDB 30.6657% -4 - C2 -2RAG - ? -
8 PsiBlast_PDB 30.5226% 9 - C2 -4XKY - ? -
24 Fugue 28.5523% 33 * C3 *1PFS - G5P_BPPF3 -
11 PsiBlast_PDB 26.6532% 1 - C2 -1JC5 - ? -
9 PsiBlast_PDB 24.3230% 34 - C2 -1JC4 - ? -