@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0018: (2015-11-27 )
MTLEKRFNKYLDRIEVSLIRQFDQSISDIPGMVKLTLGEPDFTTPDHVKEAAKSAIDANQSYYTGMSGLLALRQAAADFAKDKYNLTYNPDCEILVTIGATEALSASLIAILEAGDVVLLPAPAYPGYEPIVNLVGADIVEIDTRENDFRLTPEMLETAIIQQGEKLKAVLLNYPTNPTGITYSRQEIASLAEVLKKYDIFVISDEVYSELTYTGQQHVSIAEYLPNQTILINGLSKSHAMTGWRVGLVYAPEAFIAQIIKSHQYMVTAASTISQFAGVEALSVGKNDTLPMRQGYIKRRDYIIDKMSKLGFKIIKPSGAFYIFAKIPDSYPQDSFKFCQDFAYQQAVAIIPGVAFGKYGEGYIRLSYAASMEVIETAMARLKVFMESYEG

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]




PLP_F_6(1GDE)
?
[Raw transfer]




GLU_D_4(1GDE)
?
[Raw transfer]




PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]




PLP_B_4(1GD9)
?
[Raw transfer]




UNL_A_4(1VP4)
?
[Raw transfer]




PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]




PLP_B_4(1DJU)
?
[Raw transfer]




PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]




PLP_A_3(1GD9)
?
[Raw transfer]




PMP_A_4(3E2Y)
KAT3_MOUSE
[Raw transfer]




HCI_E_5(1V2F)
?
[Raw transfer]




GLN_A_3(3E2Y)
KAT3_MOUSE
[Raw transfer]




PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]




PLP_A_3(1J32)
?
[Raw transfer]




PLP_A_3(1J32)
?
[Raw transfer]




PLP_B_4(1J32)
?
[Raw transfer]




PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]




PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]




PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]




PLP_A_3(1V2E)
?
[Raw transfer]




PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]




PLP_A_3(1V2F)
?
[Raw transfer]




PLP_A_3(1V2D)
?
[Raw transfer]




PLP_B_4(1V2F)
?
[Raw transfer]




MES_A_3(3JTX)
?
[Raw transfer]




PLP_B_4(1V2E)
?
[Raw transfer]




52 HHSearch 95.6338%-112 - C1 -1GD9 4.0 ?
2 PsiBlast_PDB 91.5738%-110 - C1 -1GDE - ? -
3 PsiBlast_PDB 91.4638%-110 - C1 -1GD9 - ? -
1 PsiBlast_PDB 91.1438%-112 - C1 -1DJU - ? -
23 PsiBlast_CBE 91.0838%-112 - C1 -1GD9 3.8 ?
21 PsiBlast_CBE 91.0038%-112 - C1 -1DJU 4.1 ?
22 PsiBlast_CBE 90.4338%-108 - C1 -1GDE 5.1 ?
58 HHSearch 85.0936%-115 * C1 *1O4S 4.3 AAT_THEMA
38 PsiBlast_CBE 84.3634%-109 - C1 -5BJ3 - AAT_THET8 -
40 PsiBlast_CBE 84.2734%-109 - C1 -5BJ3 - AAT_THET8 -
10 PsiBlast_PDB 83.9434%-109 - C1 -5BJ3 - AAT_THET8 -
9 PsiBlast_PDB 83.7834%-108 - C1 -5BJ4 4.5 AAT_THET8
53 HHSearch 83.7632%-103 - C1 -1J32 5.1 ?
4 PsiBlast_PDB 83.7234%-118 - C1 -1O4S - AAT_THEMA -
24 PsiBlast_CBE 83.1834%-117 - C1 -1O4S 4.1 AAT_THEMA
39 PsiBlast_CBE 82.7734%-108 - C1 -5BJ3 - AAT_THET8 -
55 HHSearch 82.3533%-103 - C1 -1B5P 4.3 AAT_THET8
27 PsiBlast_CBE 82.2434%-107 - C1 -5BJ4 4.5 AAT_THET8
48 PsiBlast_CBE 81.1033%-109 - C1 -1XI9 - ? -
56 HHSearch 80.8131%-108 - C1 -3E2Y 4.7 KAT3_MOUSE
11 PsiBlast_PDB 80.7034%-109 - C1 -1B5O 4.1 AAT_THET8
41 PsiBlast_CBE 79.9134%-107 - C1 -1B5O 4.6 AAT_THET8
25 PsiBlast_CBE 79.6034%-108 - C1 -1GCK 6.0 AAT_THET8
26 PsiBlast_CBE 79.5034%-107 - C1 -1B5P 4.4 AAT_THET8
13 PsiBlast_PDB 77.9733%-102 - C1 -1J32 5.1 ?
19 PsiBlast_PDB 77.8531%-117 - C1 -1V2D 3.5 ?
50 PsiBlast_CBE 77.0931%-118 - C1 -1V2F 3.6 ?
49 PsiBlast_CBE 76.8231%-118 - C1 -1V2F 3.0 ?
45 PsiBlast_CBE 76.5133%-102 - C1 -1J32 4.6 ?
20 PsiBlast_PDB 76.2631%-117 - C1 -1V2E 3.9 ?
51 PsiBlast_CBE 75.7931%-120 - C1 -1V2E 3.8 ?