@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0032: (2015-11-27 )
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQAGIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RFW_A_6(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_C_10(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_D_12(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_B_8(4UTW)
NANE_CLOPE
[Raw transfer]




LRY_A_3(4UTU)
NANE_CLOPE
[Raw transfer]




LRY_B_5(4UTU)
NANE_CLOPE
[Raw transfer]




16G_A_3(3IGS)
NANE2_SALTY
[Raw transfer]




PEG_A_3(3Q58)
NANE_SALTI
[Raw transfer]




PEG_A_3(3Q58)
NANE_SALTI
[Raw transfer]




47 HHSearch 99.4476%-114 - C2 -1YXY - NANE_STRP1 -
1 PsiBlast_PDB 98.4775%-114 - C2 -1YXY - NANE_STRP1 -
48 HHSearch 85.2146%-113 - C2 -1Y0E - NANE_STAAN -
5 PsiBlast_PDB 81.9547%-102 - C2 -1Y0E - NANE_STAAN -
25 PsiBlast_CBE 81.5850%-104 - C2 -4UTT - NANE_CLOP1 -
4 PsiBlast_PDB 81.5450%-103 - C2 -4UTU 5.0 NANE_CLOPE
27 PsiBlast_CBE 81.5150%-103 - C2 -4UTU 5.1 NANE_CLOPE
26 PsiBlast_CBE 81.5150%-103 * C2 *4UTT - NANE_CLOP1 -
24 PsiBlast_CBE 81.2550%-104 - C2 -4UTW 4.0 NANE_CLOPE
3 PsiBlast_PDB 80.8250%-103 - C2 -4UTT - NANE_CLOP1 -
2 PsiBlast_PDB 80.6550%-103 - C2 -4UTW 3.6 NANE_CLOPE
22 PsiBlast_CBE 80.4650%-103 - C2 -4UTT - NANE_CLOP1 -
23 PsiBlast_CBE 80.2450%-102 - C2 -4UTW 4.0 NANE_CLOPE
21 PsiBlast_CBE 80.0150%-102 - C2 -4UTW 3.9 NANE_CLOPE
6 PsiBlast_PDB 76.0837% -95 - C2 -3IGS 2.4 NANE2_SALTY
50 HHSearch 75.5032%-107 - C2 -3Q58 2.4 NANE_SALTI
49 HHSearch 73.4336%-101 - C2 -3IGS - NANE2_SALTY -
7 PsiBlast_PDB 72.5037% -88 - C2 -3Q58 2.5 NANE_SALTI
52 HHSearch 62.0714%-102 - C2 -3QJA - TRPC_MYCTU -
58 HHSearch 59.1523% -92 - C2 -2NV1 - PDXS_BACSU -