@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0047: (2015-11-27 )
MLERYSRPEMAAIWTEENKYRAWLEVEILADEAWAELGEIPKEDVTKIREKADFDIDRILEIEQDTRHDVVAFTRAVSETLGEERKWVHYGLTSTDVVDTAYGYLYKQANDIIRRDLENFTNIVAEKAKEHKFTIMMGRTHGVHAEPTTFGLKLATWYSEMKRNIERFEHAAAGVEAGKISGAVGNFANIPPFVEEYVCDKLGIHPQEISTQVLPRDLHAEYFAVLASIATSIERMATEIRGLQKSEQREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMVTAYENVALWHERDISHSSAERIITPDTTILIDYMLNRFGNIVKNLTVFPENMMRNMESTFGLIYSQRVMLKLIEKGMTREEAYDLVQPKTAYSWDNQVDFKPLLEEDTKVTSCLTQEELDELFNPIYYTKRVDDIFERLGLEK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_A_3(4EEI)
?
[Raw transfer]




AMP_B_15(4EEI)
?
[Raw transfer]




AMP_A_3(2X75)
PUR8_STAAW
[Raw transfer]




EDO_B_14(4EEI)
?
[Raw transfer]




25 HHSearch 99.8776% -79 - C3 -2PFM - ? -
1 PsiBlast_PDB 99.4975% -81 - C3 -2PFM - ? -
21 PsiBlast_CBE 98.1275% -78 - C3 -2PFM - ? -
3 PsiBlast_PDB 94.9167% -73 - C3 -2X75 2.6 PUR8_STAAW
24 HHSearch 89.9752% -75 - C3 -1C3C - PUR8_THEMA -
5 PsiBlast_PDB 89.5852% -76 - C3 -1C3C - PUR8_THEMA -
4 PsiBlast_PDB 88.9552% -77 - C3 -1C3U - PUR8_THEMA -
22 PsiBlast_CBE 88.7552% -76 - C3 -1C3U - PUR8_THEMA -
23 PsiBlast_CBE 78.9538% -68 - C3 -4EEI 4.8 ?
6 PsiBlast_PDB 78.8238% -67 - C3 -4EEI 3.0 ?
46 Fugue 77.9936% -59 - C3 -4EEI 4.7 ?
29 HHSearch 77.7626% -68 - C3 -2J91 - PUR8_HUMAN -
26 HHSearch 77.4527% -62 - C3 -1RE5 - ? -
11 PsiBlast_PDB 77.3425% -70 - C3 -2VD6 - PUR8_HUMAN -
27 HHSearch 77.1828% -64 - C3 -1Q5N - PCAB_ACIAD -
10 PsiBlast_PDB 76.8626% -67 - C3 -2J91 - PUR8_HUMAN -
8 PsiBlast_PDB 76.6827% -66 - C3 -1RE5 - ? -
30 HHSearch 76.5626% -63 - C3 -3C8T - ? -
7 PsiBlast_PDB 75.5534% -66 - C3 -1DOF - ? -
13 PsiBlast_PDB 74.5826% -64 - C3 -3C8T - ? -