@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0106: (2015-11-28 )
MTKYIFVTGGVVSSIGKGIVAASLGRLLKNRGLKVTIQKFDPYINIDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKIYSEVLKKERRGEYLGATVQVIPHVTDALKEKIKRAATTTDSDVIITEVGGTVGDIESLPFLEALRQMKADVGSDNVMYIHTTLLPYLKAAGEMKTKPTQHSVKELRGLGIQPNMLVIRTEQPAGQSIKNKLAQFCDVAPEAVIESLDVDHIYQIPLNMQAQNMDQIVCDHLKLETPAADMTEWSAMVDKVMNLEKKVKIALVGKYVELPDAYLSVVEALKHSGYVNDVAIDLKWVNAAEVTEDNIKELVGDADGIIVPGGFGQRGSEGKIEAIRYARENDVPMLGVCLGMQLTCVEFARNVLKLHGANSAELDPKTPFPIIDIMRDQIDIEDMGGTLRLGLYPCKLKAGSRAAAAYNNQEVVQRRHRHRYEFNTKFREQFEAAGFVFSGVSPDNRLMEVVELPEKKFFVAAQYHPELQSRPNHAEELYTAFVTAAVENMK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(4ZDK)
PYRG_MYCTU
[Raw transfer]




ACP_B_8(4ZDK)
PYRG_MYCTU
[Raw transfer]




ADP_B_6(2AD5)
PYRG_ECOLI
[Raw transfer]




UTP_A_3(4ZDJ)
PYRG_MYCTU
[Raw transfer]




ADP_B_5(3IHL)
PYRG2_HUMAN
[Raw transfer]




MPD_B_(1S1M)
PYRG_ECOLI
[Raw transfer]




29 PsiBlast_CBE 96.1750% -79 - C4 -2AD5 5.0 PYRG_ECOLI
24 PsiBlast_CBE 95.8951% -84 - C4 -4ZDI - PYRG_MYCTU -
83 Fugue 95.4250% -78 - C4 -1S1M - PYRG_ECOLI -
28 PsiBlast_CBE 95.2151% -83 - C4 -4ZDI - PYRG_MYCTU -
23 PsiBlast_CBE 95.1351% -82 - C4 -4ZDI - PYRG_MYCTU -
52 HHSearch 95.0350% -80 * C4 *3NVA - PYRG_SULSO -
30 PsiBlast_CBE 94.9050% -79 - C4 -1S1M 3.0 PYRG_ECOLI
22 PsiBlast_CBE 94.8251% -82 - C4 -4ZDI - PYRG_MYCTU -
1 PsiBlast_PDB 94.7950% -81 - C4 -3NVA - PYRG_SULSO -
3 PsiBlast_PDB 94.7851% -82 - C4 -4ZDI - PYRG_MYCTU -
25 PsiBlast_CBE 94.7051% -82 - C4 -4ZDI - PYRG_MYCTU -
27 PsiBlast_CBE 94.6551% -81 - C4 -4ZDI - PYRG_MYCTU -
26 PsiBlast_CBE 94.5551% -82 - C4 -4ZDI - PYRG_MYCTU -
21 PsiBlast_CBE 94.2951% -79 - C4 -4ZDK 5.0 PYRG_MYCTU
4 PsiBlast_PDB 94.0651% -79 - C4 -4ZDJ 4.7 PYRG_MYCTU
2 PsiBlast_PDB 93.6251% -80 - C4 -4ZDK 5.2 PYRG_MYCTU
31 PsiBlast_CBE 65.0751% -95 - C4 -3IHL 6.2 PYRG2_HUMAN
5 PsiBlast_PDB 62.1440% -88 - C4 -2VKT - PYRG2_HUMAN -
6 PsiBlast_PDB 61.2739% -83 - C4 -2V4U - PYRG2_HUMAN -
56 HHSearch 60.4339% -78 - C4 -2V4U - PYRG2_HUMAN -