@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0112: (2015-11-28 )
MANKIRVRYAPSPTGLLHIGNARTALFNYLYARHHGGDFVIRIEDTDRKRHVEDGERSQLENLRWLGMDWDESPETHENYRQSERLELYQRYIDQLLAEGKAYKSYVTEEELAAERERQELAGETPRYINEFIGMSETEKEAYIAEREASGIIPTVRLAVNESGIYKWTDMVKGDIEFEGSNIGGDWVIQKKDGYPTYNFAVVIDDHDMQISHVIRGDDHIANTPKQLMVYEALGWEAPQFGHMTLIINSETGKKLSKRDTNTLQFIEDYRKKGYMSEAVFNFIALLGWNPGGEEEIFSREQLINLFDENRLSKSPAAFDQKKMDWMSNDYLKNADFESVFALCKPFLEEAGRLTDKAEKLVELYKPQLKSADEIVPLTDLFFADFPELTEAEKEVMAAETVPTVLSAFKEKLVSLSDEEFTRDTIFPQIKAVQKETGIKGKNLFMPIRIAVSGEMHGPELPDTIYLLGKEKSVQHIDNMLAKL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]



GSU_A_2(3AFH)
SYE2_THEMA
[Raw transfer]



ATP_A_4(1J09)
SYE_THET8
[Raw transfer]



ATP_A_4(1J09)
SYE_THET8
[Raw transfer]



ATP_A_3(1N75)
SYE_THET8
[Raw transfer]



GLU_B_7(4GRI)
SYE_BORBU
[Raw transfer]



GLU_A_4(4GRI)
SYE_BORBU
[Raw transfer]



GLU_B_2(2CUZ)
SYE_THET8
[Raw transfer]



GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]



GLU_A_3(2CFO)
SYE_THEEB
[Raw transfer]
46 HHSearch 95.7742% -78 - C5 -2O5R - SYE1_THEMA -
41 HHSearch 95.6640% -76 - C5 -2CFO 3.0 SYE_THEEB
1 PsiBlast_PDB 93.6940% -74 - C5 -2O5R - SYE1_THEMA -
24 PsiBlast_CBE 93.4936% -69 - C5 -2DXI - SYE_THET8 -
2 PsiBlast_PDB 93.4840% -74 - C5 -2CFO 3.0 SYE_THEEB
26 PsiBlast_CBE 92.7536% -68 - C5 -2CV1 - SYE_THET8 -
27 PsiBlast_CBE 92.6636% -67 - C5 -2CV0 - SYE_THET8 -
14 PsiBlast_PDB 92.3336% -67 - C5 -2DXI - SYE_THET8 -
7 PsiBlast_PDB 92.0436% -69 - C5 -1N75 6.7 SYE_THET8
9 PsiBlast_PDB 91.9836% -68 - C5 -1N78 - SYE_THET8 -
8 PsiBlast_PDB 91.7936% -69 - C5 -1N77 - SYE_THET8 -
28 PsiBlast_CBE 91.7736% -66 - C5 -1N78 - SYE_THET8 -
25 PsiBlast_CBE 91.5636% -66 - C5 -2CV2 - SYE_THET8 -
11 PsiBlast_PDB 91.5136% -67 - C5 -2CV0 - SYE_THET8 -
6 PsiBlast_PDB 91.3836% -67 - C5 -1J09 7.0 SYE_THET8
43 HHSearch 91.3536% -71 * C5 *1J09 7.0 SYE_THET8
13 PsiBlast_PDB 91.3036% -66 - C5 -2CV2 - SYE_THET8 -
29 PsiBlast_CBE 91.2836% -66 - C5 -1N77 - SYE_THET8 -
12 PsiBlast_PDB 91.2236% -66 - C5 -2CV1 - SYE_THET8 -
10 PsiBlast_PDB 91.0136% -68 - C5 -2CUZ 4.4 SYE_THET8
30 PsiBlast_CBE 90.9234% -71 - C5 -4GRI 3.5 SYE_BORBU
15 PsiBlast_PDB 90.4834% -72 - C5 -4GRI 3.5 SYE_BORBU
44 HHSearch 87.1038% -71 - C5 -3AFH 6.9 SYE2_THEMA
3 PsiBlast_PDB 85.2537% -70 - C5 -3AFH 6.9 SYE2_THEMA