@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0154: (2015-11-28 )
MNIFDELKERGLVFQTTDEDALRKALEEGSVSYYTGYDPTADSLHLGHLVAILTSRRLQLAGHKPYALVGGATGLIGDPSFKDVERSLQTKETVVSWGNKIRGQLSNFLEFETGDNKAVLVNNYDWFSNISFIDFLRDVGKYFTVNYMMSKESVKKRIETGISYTEFAYQIMQGYDFYELNKNYNVTLQIGGSDQWGNMTAGTELIRRKSNGVSHVMTVPLITDSTGKKFGKSEGNAVWLDADKTSPYEMYQFWLNVMDADAVRFLKIFTFLSLKEIEDIRIQFEEAPHQRLAQKTLAREVVTLVHGEKAYKEAVNITEQLFAGNIKGLSVKELKQGLRGVPNYHVQTEDNLNIIDLLVTSGVVNSKRQAREDVSNGAIYINGDRIQDLEYTISENDKLENEITVIRRGKKKYFVLNFK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YSA_H_8(1VBM)
SYY_ECOLI
[Raw transfer]




YSA_C_3(1VBN)
SYY_ECOLI
[Raw transfer]




YSA_D_4(1VBN)
SYY_ECOLI
[Raw transfer]




YSA_G_7(1VBM)
SYY_ECOLI
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_B_4(2PID)
SYYM_HUMAN
[Raw transfer]




YSA_A_3(2PID)
SYYM_HUMAN
[Raw transfer]




TYA_C_3(3TS1)
SYY_GEOSE
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




AZY_A_2(2YXN)
SYY_ECOLI
[Raw transfer]




TYR_E_5(1X8X)
SYY_ECOLI
[Raw transfer]




TYR_S_3(1TYB)
SYY_GEOSE
[Raw transfer]




TYR_S_3(1TYD)
SYY_GEOSE
[Raw transfer]




TYR_S_3(1TYA)
SYY_GEOSE
[Raw transfer]




IYR_C_3(1WQ3)
SYY_ECOLI
[Raw transfer]




TYR_C_3(4TS1)
SYY_GEOSE
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




TYR_C_3(1Y42)
SYYM_NEUCR
[Raw transfer]




TYR_C_3(1WQ4)
SYY_ECOLI
[Raw transfer]




TYR_D_4(4TS1)
SYY_GEOSE
[Raw transfer]




383_C_3(1JII)
SYY_STAAE
[Raw transfer]




485_C_3(1JIL)
SYY_STAAE
[Raw transfer]




545_C_3(1JIK)
SYY_STAAE
[Raw transfer]




629_C_3(1JIJ)
SYY_STAAE
[Raw transfer]




TYR_X_2(4OJM)
SYYM_NEUCR
[Raw transfer]




70 HHSearch 96.8843% -93 - C3 -2JAN - SYY_MYCTU -
18 PsiBlast_PDB 96.7644% -90 * C3 *2JAN - SYY_MYCTU -
7 PsiBlast_PDB 88.6759% -82 - C3 -1TYA 2.8 SYY_GEOSE
10 PsiBlast_PDB 88.3659% -80 - C3 -1TYB 2.7 SYY_GEOSE
8 PsiBlast_PDB 87.9059% -81 - C3 -1TYD 3.4 SYY_GEOSE
9 PsiBlast_PDB 87.4059% -79 - C3 -1TYC - SYY_GEOSE -
74 HHSearch 86.9656% -82 - C3 -2YXN 2.6 SYY_ECOLI
6 PsiBlast_PDB 86.9053% -81 - C3 -1JIL 5.2 SYY_STAAE
2 PsiBlast_PDB 86.8556% -84 - C3 -3TS1 6.5 SYY_GEOSE
23 PsiBlast_CBE 86.8356% -81 - C3 -1VBN 6.7 SYY_ECOLI
11 PsiBlast_PDB 86.8359% -81 - C3 -4TS1 2.8 SYY_GEOSE
1 PsiBlast_PDB 86.8356% -80 - C3 -2TS1 - SYY_GEOSE -
14 PsiBlast_PDB 86.7656% -78 - C3 -1WQ3 3.6 SYY_ECOLI
69 HHSearch 86.6356% -80 - C3 -2TS1 - SYY_GEOSE -
15 PsiBlast_PDB 86.4556% -81 - C3 -2YXN 2.6 SYY_ECOLI
22 PsiBlast_CBE 86.3156% -80 - C3 -1VBM 8.1 SYY_ECOLI
21 PsiBlast_CBE 86.0359% -80 - C3 -4TS1 2.9 SYY_GEOSE
12 PsiBlast_PDB 86.0056% -80 - C3 -1X8X 3.2 SYY_ECOLI
5 PsiBlast_PDB 85.7453% -79 - C3 -1JIK 6.0 SYY_STAAE
13 PsiBlast_PDB 84.3256% -79 - C3 -1VBM 7.4 SYY_ECOLI
16 PsiBlast_PDB 84.1856% -78 - C3 -1WQ4 2.9 SYY_ECOLI
4 PsiBlast_PDB 84.0953% -85 - C3 -1JIJ 2.6 SYY_STAAE
17 PsiBlast_PDB 83.8256% -79 - C3 -1VBN 7.5 SYY_ECOLI
3 PsiBlast_PDB 82.1953% -81 - C3 -1JII 2.7 SYY_STAAE
73 HHSearch 78.5241% -70 - C3 -2PID 7.9 SYYM_HUMAN
72 HHSearch 78.3838% -77 - C3 -1Y42 3.2 SYYM_NEUCR
27 PsiBlast_CBE 78.1134% -82 - C3 -1Y42 3.2 SYYM_NEUCR
26 PsiBlast_CBE 78.0634% -81 - C3 -4OJM 3.4 SYYM_NEUCR
25 PsiBlast_CBE 75.8841% -75 - C3 -2PID 7.5 SYYM_HUMAN
19 PsiBlast_PDB 75.8741% -72 - C3 -2PID 7.9 SYYM_HUMAN