@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0198: (2015-11-29 )
MSKQVFEMIFAGKKLVVETGQVAKQANGSVVVRYGDSTVLTAAVMSKKMSTGDFFPLQVNYEEKMYAAGKFPGGFNKREGRPSTDATLTARLIDRPIRPMFAEGFRNEVQVINTVLSFDENASAPMAAMFGSSLALSISDIPFNGPIAGVQVAYVDGNFIINPTAQEQEASALELTVAGTKEAINMVESGAKELSEEIMLEALLKGHEAVCELIAFQEEIVTAIGKEKAEVELLQVDPELQAEIIATHNIALQAAVQVEEKKAREAATEAVKEVVIGEYEARYAEHEEYDRIMRDVAEILEQMEHAEVRRLITEDKVRPDGRRVDEIRPLDAVIDFLPQVHGSGLFTRGQTQALSVLTLAPMGEAQIIDGLTPEYKKRFMHHYNFPQYSVGETGRYGAAGRREIGHGALGERALEQVLPSLEEFPYAIRLVAEVLESNGSSSQASICAGTLALMAGGVPIKAPVAGIAMGLISDGTNYTVLTDIQGLEDHFGDMDFKVAGTREGITALQMDIKIEGITPQILEEALAQAKKARFEILDVLHGAIAEPRPQLAPTAPKIDMIKIDVDKIKVVIGKGGETIDKIIAETGVKIDIDEEGNVSIFSSDQAAIDRTKDIIASLVREAKVGEVYHAKVVRIEKFGAFVNLFDKTDALVHISEIAWTRTANVADVLEIGEEVDVKVIKIDDKGRVDASMKALLPRPPKADNPKKES

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_U_20(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_F_6(3GCM)
PNP_ECOLI
[Raw transfer]
-
CHAIN_H_8(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_N_14(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_S_18(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_D_2(3GCM)
PNP_ECOLI
[Raw transfer]
-
CHAIN_F_6(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_P_16(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_E_4(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_J_10(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_E_4(3GCM)
PNP_ECOLI
[Raw transfer]
-
CHAIN_L_12(3H1C)
PNP_ECOLI
[Raw transfer]
-
CHAIN_W_22(3H1C)
PNP_ECOLI
[Raw transfer]
-
3 PsiBlast_PDB 88.7047% -85 - C3 -4AIM - PNP_CAUCR -
69 Fugue 86.3043% -70 - C3 -1E3P - PNP_STRAT -
1 PsiBlast_PDB 85.8348% -81 - C3 -4AM3 - PNP_CAUCR -
21 PsiBlast_CBE 85.2748% -80 - C3 -4AM3 - PNP_CAUCR -
22 PsiBlast_CBE 84.2748% -84 - C3 -4AM3 - PNP_CAUCR -
2 PsiBlast_PDB 83.3648% -80 - C3 -4AID - PNP_CAUCR -
9 PsiBlast_PDB 81.6642% -78 - C3 -1E3H - PNP_STRAT -
79 HHSearch 81.2947% -89 - C3 -3CDI - PNP_ECOLI -
70 Fugue 81.1637% -82 - C3 -3U1K - PNPT1_HUMAN -
4 PsiBlast_PDB 81.1548% -89 - C3 -3CDI - PNP_ECOLI -
37 PsiBlast_CBE 80.9949% -80 - C3 -3GCM 4.8 PNP_ECOLI
25 PsiBlast_CBE 80.7346% -74 - C3 -4NBQ - PNP_COXBU -
81 HHSearch 80.5537% -82 - C3 -3U1K - PNPT1_HUMAN -
10 PsiBlast_PDB 80.4636% -81 - C3 -3U1K - PNPT1_HUMAN -
39 PsiBlast_CBE 80.4436% -82 - C3 -3U1K - PNPT1_HUMAN -
40 PsiBlast_CBE 80.4136% -82 - C3 -3U1K - PNPT1_HUMAN -
41 PsiBlast_CBE 80.3736% -81 - C3 -3U1K - PNPT1_HUMAN -
38 PsiBlast_CBE 80.3749% -80 - C3 -3GCM 5.2 PNP_ECOLI
23 PsiBlast_CBE 80.1448% -85 - C3 -4AID - PNP_CAUCR -
31 PsiBlast_CBE 79.8949% -80 - C3 -3H1C 3.6 PNP_ECOLI
33 PsiBlast_CBE 79.8849% -75 - C3 -3H1C 8.2 PNP_ECOLI
7 PsiBlast_PDB 79.8649% -79 - C3 -3GCM 7.5 PNP_ECOLI
36 PsiBlast_CBE 79.8249% -78 - C3 -3H1C 5.7 PNP_ECOLI
29 PsiBlast_CBE 79.7949% -77 - C3 -3H1C 5.0 PNP_ECOLI
28 PsiBlast_CBE 79.6149% -79 - C3 -3H1C 4.2 PNP_ECOLI
32 PsiBlast_CBE 79.3549% -78 - C3 -3H1C 8.9 PNP_ECOLI
27 PsiBlast_CBE 79.2249% -79 - C3 -3H1C 5.5 PNP_ECOLI
34 PsiBlast_CBE 79.1349% -78 - C3 -3H1C 3.4 PNP_ECOLI
30 PsiBlast_CBE 79.0049% -79 - C3 -3H1C 4.7 PNP_ECOLI
35 PsiBlast_CBE 78.7749% -79 - C3 -3H1C 4.1 PNP_ECOLI