@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0219: (2015-11-29 )
MSYVVARMAKYKSGQLTAIYNHNERIFKNHSNKEIDVEKSHLNYELTNRDQAQNYHKQIKEHINENRLSTRGVRKDAILCNEWIITSDKTFFNSLDEKQTREFFDTAKDYFAEKYGDANIAYARVHLDESTPHMHLGIVPMKNGKLSSKALFGNKEKLVAIQDELPKYLNEHGFNLQRGEIGSKKKHLETAEFKEKQRLLDNADRKLADKHEELKALDDKISNVNDTIADKESRLKELEAKEWDAVGDLKQYELEKQSLAESIEDIKDIELLQLDRIQKEDLVKQSFDGKLKMDKETYNRLFQTASKHASSNAELKRDLVKAQSQNNHLSRELLNHRKTAEKNIKLSQENRKLKDKVKMLDEQVKILNKSLSVWKEKAKEFMPKQVYRETLSIINTLNPIGLAKTAIRQVKKMVDSNS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_F_6(4LVM)
PRE_STRAG
[Raw transfer]

-

CHAIN_C_3(4LVI)
PRE_STRAG
[Raw transfer]

-

CHAIN_C_3(4LVI)
PRE_STRAG
[Raw transfer]

-

CHAIN_C_3(4LVK)
PRE_STRAG
[Raw transfer]

-

CHAIN_E_3(4LVM)
PRE_STRAG
[Raw transfer]

-

NACID_C_3(4LVL)
PRE_STRAG
[Raw transfer]

-

42 Fugue 92.0262% -62 - C5 -4LVI 26.5 PRE_STRAG
1 PsiBlast_PDB 91.5162% -65 - C5 -4LVI 26.5 PRE_STRAG
4 PsiBlast_PDB 90.8462% -74 - C5 -4LVM 22.3 PRE_STRAG
21 PsiBlast_CBE 90.7962% -67 - C5 -4LVM 19.8 PRE_STRAG
2 PsiBlast_PDB 89.7962% -64 - C5 -4LVK 24.4 PRE_STRAG
3 PsiBlast_PDB 89.4962% -62 - C5 -4LVL 25.9 PRE_STRAG
44 Fugue 56.9817% 3 - C4 -3VWA - CEX1_YEAST -
40 HHSearch 55.2120% -38 - C- -3L6T - ? -
51 Fugue 55.1117% 15 - C3 -4XDN - SCC4_YEAST -
46 Fugue 50.8717% 64 - C5 -3Q8T - BECN1_RAT -
49 Fugue 50.6415% 79 - C5 -1NYH - SIR4_YEAST -
48 Fugue 49.159% 36 - C2 -2FEN - ? -
29 HHSearch 48.7716% 86 - C5 -3VKG - ? -
37 HHSearch 48.0816% -59 - C5 -1OMH - ? -
50 Fugue 47.2614% 129 - C5 -3E7K - TRPM7_RAT -
25 HHSearch 43.3827% 125 * C5 *2EFR - GCN4_YEAST (first) -
31 HHSearch 41.9725% 198 - C5 -2J5U - MREC_LISMO -
45 Fugue 41.3924% 117 - C5 -1DEB - APC_HUMAN -
24 HHSearch 40.8425% 147 - C5 -1DEB - APC_HUMAN -
20 PsiBlast_PDB 40.1030% 78 - C5 -1IPH - CATE_ECOLI -