@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0263: (2015-11-29 )
MSSEEKYIMAIDQGTTSSRAIIFNKKGEKIASSQKEFPQIFPQAGWVEHNANQIWNSVQSVIAGAFIESSIKPGQIEAIGITNQRETTVVWDKKTGLPIYNAIVWQSRQTAPIADQLKQEGHTNMIHEKTGLVIDAYFSATKVRWILDHVPGAQERAEKGELLFGTIDTWLVWKLTDGLVHVTDYSNAARTMLYNIKELKWDDEILELLNIPKAMLPEVKSNSEVYGKTTPFHFYGGEVPISGMAGDQQAALFGQLAFEPGMVKNTYGTGSFIIMNTGEEMQLSQNNLLTTIGYGINGKVHYALEGSIFIAGSAIQWLRDGLRMIETSSESEGLAQSSTSDDEVYVVPAFTGLGAPYWDSNARGSVFGLTRGTSKEDFVKATLQSIAYQVRDVIDTMQVDSGIDIQQLRVDGGAAMNNLLMQFQADILGIDIARAKNLETTALGAAFLAGLSVGYWESMDELKELNATGQLFQATMNESRKEKLYKGWRKAVKATQVFAQED

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_G_5(1GLD)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLC)
GLPK_ECOLI
[Raw transfer]




ATS_Y_4(1GLJ)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLE)
GLPK_ECOLI
[Raw transfer]




ATF_Y_5(1BWF)
GLPK_ECOLI
[Raw transfer]




ATS_O_5(1GLJ)
GLPK_ECOLI
[Raw transfer]




ACP_Y_5(1GLL)
GLPK_ECOLI
[Raw transfer]




ACP_O_6(1GLL)
GLPK_ECOLI
[Raw transfer]




ATF_O_6(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




EDO_O_10(3H3N)
GLPK_ENTCA
[Raw transfer]




EDO_A_5(2W41)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




EDO_B_25(2W41)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




EDO_A_9(2W41)
?
[Raw transfer]




2 PsiBlast_PDB 98.4376% -80 - C4 -3FLC 3.5 GLPK_ENTCA
78 HHSearch 97.8576% -81 - C4 -3H3N - GLPK_ENTCA -
3 PsiBlast_PDB 97.7776% -81 - C4 -3H3N - GLPK_ENTCA -
25 PsiBlast_CBE 97.7176% -81 - C4 -3H3N 3.5 GLPK_ENTCA
4 PsiBlast_PDB 97.6576% -81 - C4 -3H3O - GLPK_ENTCA -
22 PsiBlast_CBE 97.5176% -82 - C4 -3H3O - GLPK_ENTCA -
24 PsiBlast_CBE 97.4576% -82 - C4 -3H3O - GLPK_ENTCA -
6 PsiBlast_PDB 97.3876% -79 - C4 -3H46 - GLPK_ENTCA -
26 PsiBlast_CBE 97.3376% -79 - C4 -3H46 3.6 GLPK_ENTCA
5 PsiBlast_PDB 97.3176% -81 - C4 -3H45 - GLPK_ENTCA -
29 PsiBlast_CBE 97.2576% -82 - C4 -3H45 - GLPK_ENTCA -
30 PsiBlast_CBE 96.9476% -81 - C4 -3D7E - GLPK_ENTCA -
23 PsiBlast_CBE 96.9176% -82 - C4 -3H3O - GLPK_ENTCA -
7 PsiBlast_PDB 96.9176% -81 - C4 -3D7E 3.6 GLPK_ENTCA
27 PsiBlast_CBE 96.6476% -80 - C4 -3H45 - GLPK_ENTCA -
28 PsiBlast_CBE 95.7576% -79 - C4 -3H45 - GLPK_ENTCA -
76 HHSearch 92.4164% -79 - C4 -3G25 - GLPK_STAAC -
9 PsiBlast_PDB 92.1262% -79 - C4 -3G25 - GLPK_STAAC -
10 PsiBlast_PDB 91.3362% -78 - C4 -3GE1 - GLPK_STAAC -
35 PsiBlast_CBE 89.5957% -78 - C4 -3EZW - GLPK_ECOLI -
13 PsiBlast_PDB 88.0057% -75 - C4 -1GLA 2.4 GLPK_ECOLI
46 PsiBlast_CBE 86.8857% -73 - C4 -1BO5 2.7 GLPK_ECOLI
15 PsiBlast_PDB 86.5757% -72 - C4 -1GLC 5.2 GLPK_ECOLI
45 PsiBlast_CBE 86.4957% -74 - C4 -1BOT 4.6 GLPK_ECOLI
54 PsiBlast_CBE 86.0750% -80 - C4 -2D4W 3.9 ?
20 PsiBlast_PDB 86.0657% -71 - C4 -1BO5 4.1 GLPK_ECOLI
17 PsiBlast_PDB 85.7457% -72 - C4 -1GLE 5.3 GLPK_ECOLI
53 PsiBlast_CBE 85.7350% -80 - C4 -2D4W 3.2 ?
16 PsiBlast_PDB 85.6057% -72 - C4 -1GLD 5.7 GLPK_ECOLI
50 PsiBlast_CBE 85.3856% -76 - C4 -1GLJ 7.0 GLPK_ECOLI
82 HHSearch 85.2550% -77 - C4 -2D4W 3.9 ?
52 PsiBlast_CBE 85.0956% -76 - C4 -1BWF 5.5 GLPK_ECOLI
48 PsiBlast_CBE 84.8456% -77 - C4 -1GLL 5.2 GLPK_ECOLI
8 PsiBlast_PDB 84.7877% -71 - C4 -1XUP 2.5 GLPK_ENTCA
19 PsiBlast_PDB 84.5657% -71 - C4 -1BOT 4.1 GLPK_ECOLI
51 PsiBlast_CBE 84.4056% -71 - C4 -1BWF 5.9 GLPK_ECOLI
49 PsiBlast_CBE 84.1656% -72 - C4 -1GLJ 6.4 GLPK_ECOLI
47 PsiBlast_CBE 83.2056% -70 - C4 -1GLL 4.9 GLPK_ECOLI
68 PsiBlast_CBE 78.2937% -74 - C4 -2W41 3.1 ?
67 PsiBlast_CBE 77.9337% -74 - C4 -2W41 2.9 ?