@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0270: (2015-11-29 )
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVPDSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPLTGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQANREG

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]




ATP_A_3(4QC2)
?
[Raw transfer]




ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]




ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]




GOL_A_5(4P33)
LPTB_ECOLI
[Raw transfer]




GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]




2 PsiBlast_PDB 92.2033%-119 - C1 -4RVC - ? -
44 HHSearch 91.9332%-119 - C1 -1VPL - ? -
1 PsiBlast_PDB 88.3933%-113 - C1 -1VPL - ? -
4 PsiBlast_PDB 83.7732%-110 - C1 -4QC2 6.6 ?
21 PsiBlast_CBE 82.9332%-112 - C1 -4QC2 7.2 ?
5 PsiBlast_PDB 82.7532%-111 - C1 -4P32 6.0 LPTB_ECOLI
6 PsiBlast_PDB 80.5831%-112 - C1 -4P33 2.7 LPTB_ECOLI
22 PsiBlast_CBE 80.3032%-110 - C1 -4P32 6.6 LPTB_ECOLI
23 PsiBlast_CBE 79.6231%-109 - C1 -4P33 2.7 LPTB_ECOLI
56 Fugue 78.5528%-111 - C1 -1OXS - ? -
61 Fugue 77.5425%-105 - C1 -1Z47 - ? -
41 HHSearch 75.9430%-109 - C1 -1OXX - ? -
35 HHSearch 72.9529%-112 - C1 -1V43 - ? -
64 Fugue 72.8427%-100 - C1 -3B60 - MSBA_SALTY -
51 HHSearch 72.4327%-113 - C1 -2OLJ - ? -
17 PsiBlast_PDB 71.9229%-122 - C1 -2D62 - ? -
9 PsiBlast_PDB 71.1230%-110 - C1 -1V43 - ? -
34 HHSearch 71.0326%-110 - C1 -1Z47 - ? -
33 PsiBlast_CBE 70.9031%-117 - C1 -3TIF - Y796_METJA -
19 PsiBlast_PDB 70.8524%-115 - C1 -3DHW - METN_ECOLI -
7 PsiBlast_PDB 48.9032% -11 - C1 -4P31 6.4 LPTB_ECOLI