@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0279: (2015-11-29 )
MSFKDFNFKPYIQRALDELKFVDPTDVQAKLIPVVRSGRDLVGESKTGSGKTHTFLLPIFEKLDESSDDVQVVITAPSRELGTQIYQATKQIAEHSEQEIRVVNYVGGTDKLRQIEKLKVSQPHIVIGTPGRIYDLVKSGDLAIHKAHTFVVDEADMTLDMGFLDTVDKIAGSLPKDVQILVFSATIPQKLQPFLKKYLTNPVMEKIKTATVIADTIDNWLLSTKGRDKNAQILELSKLMQPYLAMIFVNTKERADELHSYLSSNGLKVAKIHGGIAPRERKRIMNQVKNLEFEYIVATDLAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGLSGTAITLYQPSDDSDIRELEKLGINFIPKVIKNGEFQDTYDRDRRNNREKSYQKLDTEMIGLVKKKKKKIKPGYKKKIQWKVDEKRRKERRASNRAKGRAERKAKKQSF

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]



ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]



ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]



ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]



ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]



ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]



ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]



AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]



ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]



FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]



FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]
26 PsiBlast_CBE 90.8834%-101 - C5 -4KBG - ? -
27 PsiBlast_CBE 90.2934%-108 - C5 -4KBF - ? -
5 PsiBlast_PDB 88.5930%-101 - C5 -2I4I 4.5 DDX3X_HUMAN
16 PsiBlast_PDB 88.2634% -96 - C5 -4KBF - ? -
30 PsiBlast_CBE 87.9431%-113 - C5 -2VSX - IF4A_YEAST -
31 PsiBlast_CBE 87.8331%-112 - C5 -2VSO - IF4A_YEAST -
29 PsiBlast_CBE 87.7931%-113 - C5 -2VSX - IF4A_YEAST -
20 PsiBlast_PDB 87.6731%-103 - C5 -1S2M - DHH1_YEAST -
100 HHSearch 87.4834% -88 - C5 -2DB3 - VASA1_DROME -
32 PsiBlast_CBE 87.4331%-113 - C5 -2VSO - IF4A_YEAST -
110 HHSearch 87.1832%-103 - C5 -2I4I - DDX3X_HUMAN -
2 PsiBlast_PDB 86.7732%-100 - C5 -4CT4 - DDX6_HUMAN -
13 PsiBlast_PDB 86.7030% -88 - C5 -4PXA 4.6 DDX3X_HUMAN
22 PsiBlast_CBE 86.6332% -92 - C5 -4CT4 - DDX6_HUMAN -
104 HHSearch 86.6229%-100 - C5 -3FHT 9.4 DD19B_HUMAN
103 HHSearch 86.6131% -95 - C5 -3I5X - MS116_YEAST -
28 PsiBlast_CBE 86.4531%-103 - C5 -4BRW - DHH1_YEAST -
11 PsiBlast_PDB 86.3828% -93 - C5 -3EX7 - IF4A3_HUMAN -
109 HHSearch 86.3531% -93 - C5 -3SQW - MS116_YEAST -
8 PsiBlast_PDB 85.8428% -92 - C5 -2J0S - IF4A3_HUMAN -
50 PsiBlast_CBE 64.3132%-106 - C5 -1T6N 3.0 DX39B_HUMAN
51 PsiBlast_CBE 63.9332%-104 - C5 -1T6N 2.6 DX39B_HUMAN
61 PsiBlast_CBE 60.0035% -96 - C5 -2OXC 6.4 DDX20_HUMAN
59 PsiBlast_CBE 59.8235% -92 - C5 -3B7G 6.0 DDX20_HUMAN
62 PsiBlast_CBE 59.6935% -96 - C5 -2OXC 7.5 DDX20_HUMAN
55 PsiBlast_CBE 59.4532%-109 - C5 -2PL3 6.0 DDX10_HUMAN
60 PsiBlast_CBE 58.9735% -94 - C5 -3B7G 5.9 DDX20_HUMAN