@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0321: (2015-11-30 )
MKVFASPSRYIQGKDALFQSIEHIKSLGQTPLILCDDVVYNIVGERFLSYLQDDLLPHRVSFNGEASDNEINRVVAVAKEKNSDLIIGLGGGKTIDSAKAIADKVNLPVVIAPTVASTDAPTSALSVIYTDEGAFEKYIFYSKNPDLVLVDTQVIAQAPKRLLASGIADGLATWVEARAVLQKNGIAMAGGRQTLAGVAIAQACERTLFNDSLQALAACDAKVVTKALENVIEANTLLSGLGFESAGLAAAHAIHNGFTALSGDIHHLTHGEKVAYGTLTQLFLENRPKEEIDRYINLYQAIGMPTTLAELHLGDATYEELLKVGQQATIEGETIHEMPFKISAEDVAAALLTVDRYVSNHQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




NAD_A_4(1JQ5)
GLDA_GEOSE
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




TRS_A_4(1KQ3)
GLDA_THEMA
[Raw transfer]




GOL_B_9(4MCA)
?
[Raw transfer]




GOL_A_5(4MCA)
?
[Raw transfer]




GOL_A_4(1JQA)
GLDA_GEOSE
[Raw transfer]




GOL_A_8(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_B_9(1TA9)
GLD1_SCHPO
[Raw transfer]




GOL_A_8(1TA9)
GLD1_SCHPO
[Raw transfer]




51 Fugue 97.9155% -92 - C2 -1JQ5 9.6 GLDA_GEOSE
49 Fugue 97.3155% -91 - C2 -1JQ5 9.6 GLDA_GEOSE
3 PsiBlast_PDB 96.5554% -92 - C2 -1JQ5 9.6 GLDA_GEOSE
26 HHSearch 96.4254% -94 - C2 -1JQ5 9.6 GLDA_GEOSE
2 PsiBlast_PDB 96.2854% -97 - C2 -1JQA 3.6 GLDA_GEOSE
1 PsiBlast_PDB 94.7154% -96 - C2 -1JPU - GLDA_GEOSE -
4 PsiBlast_PDB 92.9447% -94 - C2 -4MCA 3.5 ?
21 PsiBlast_CBE 91.9147% -96 - C2 -4MCA 3.9 ?
5 PsiBlast_PDB 91.4245% -92 - C2 -1TA9 2.5 GLD1_SCHPO
22 PsiBlast_CBE 90.8545% -92 - C2 -1TA9 2.4 GLD1_SCHPO
33 HHSearch 88.2544% -92 - C2 -1TA9 2.4 GLD1_SCHPO
6 PsiBlast_PDB 87.4446% -87 - C2 -1KQ3 3.1 GLDA_THEMA
7 PsiBlast_PDB 86.6242% -84 - C2 -3UHJ - ? -
27 HHSearch 85.9442% -84 - C2 -3UHJ - ? -
30 HHSearch 84.3146% -83 - C2 -1KQ3 3.1 GLDA_THEMA
35 HHSearch 59.0221% -71 - C2 -1VLJ - ? -
31 HHSearch 58.1722% -69 - C2 -3BFJ - DHAT_KLEPN -
37 HHSearch 58.0320% -71 * C2 *3JZD - ? -
36 HHSearch 57.4619% -69 - C2 -3W5S - ? -
34 HHSearch 55.6119% -65 - C2 -1O2D - ? -