@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0343: (2015-11-30 )
MLDLKRIRTDFDVVAKKLATRGVDQETLTTLKELDIKRRELLIKAEEAKAQRNVASAAIAQAKRNKENADEQIAAMQTLSADIKAIDAELADVDANLQSMVTVLPNTPADDVPLGADEDENVEVRRWGTPREFDFETKAHWDLGESLGILDWERGAKVTGSRFLFYKGLGARLERAIYSFMLDEHAKEGYTEVIPPYMVNHDSMFGTGQYPKFKEDTFELADSPFVLIPTAEVPLTNYYRDEIIDGKELPIYFTAMSPSFRSEAGSAGRDTRGLIRLHQFHKVEMVKFAKPEESYQELEKMTANAENILQKLNLPYRVITLCTGDMGFSAAKTYDLEVWIPAQNTYREISSCSNTEDFQARRAQIRYRDEVDGKVRLLHTLNGSGLAVGRTVAAILENYQNEDGSVTIPEVLRPYMGNIDIIKPN

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]



ATP_A_3(3LSS)
?
[Raw transfer]



ATP_A_3(3LSS)
?
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



AHX_C_3(1SES)
SYS_THET2
[Raw transfer]



ATP_B_7(3LSS)
?
[Raw transfer]



SSA_D_4(1SET)
SYS_THET2
[Raw transfer]



AHX_C_3(1SES)
SYS_THET2
[Raw transfer]



SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]



SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]



ATP_B_7(3LSS)
?
[Raw transfer]



SSA_C_3(1SET)
SYS_THET2
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_D_4(1SES)
SYS_THET2
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]



AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]
1 PsiBlast_PDB 88.7754% -70 - C2 -2DQ3 6.5 SYS_AQUAE
43 HHSearch 88.6555% -71 - C2 -2DQ3 6.5 SYS_AQUAE
45 HHSearch 83.1241% -66 - C2 -2DQ0 6.4 SYS_PYRHO
3 PsiBlast_PDB 82.5739% -69 - C2 -2ZR2 - SYS_PYRHO -
2 PsiBlast_PDB 82.1939% -68 - C2 -2DQ0 - SYS_PYRHO -
21 PsiBlast_CBE 81.9939% -68 - C2 -2ZR2 - SYS_PYRHO -
4 PsiBlast_PDB 81.9339% -67 - C2 -2ZR3 - SYS_PYRHO -
22 PsiBlast_CBE 81.9139% -67 - C2 -2DQ0 6.5 SYS_PYRHO
23 PsiBlast_CBE 78.4936% -60 - C2 -1SET 6.6 SYS_THET2
34 Fugue 77.9933% -61 - C2 -3LSS 5.4 ?
8 PsiBlast_PDB 77.9436% -59 - C2 -1SET 6.5 SYS_THET2
5 PsiBlast_PDB 77.9036% -62 - C2 -1SRY - SYS_THET2 -
24 PsiBlast_CBE 77.6036% -59 - C2 -1SES 5.7 SYS_THET2
7 PsiBlast_PDB 77.2036% -58 - C2 -1SES 6.0 SYS_THET2
44 HHSearch 76.6837% -57 - C2 -1SES 6.0 SYS_THET2
26 PsiBlast_CBE 76.4432% -61 - C2 -3LSS 5.4 ?
42 HHSearch 76.2133% -59 - C2 -3LSS 5.7 ?
13 PsiBlast_PDB 76.1632% -67 - C2 -3LSQ - ? -
14 PsiBlast_PDB 76.1332% -64 - C2 -3LSS 5.7 ?
6 PsiBlast_PDB 75.6036% -65 - C2 -1SER - SYS_THET2 -
25 PsiBlast_CBE 69.2137% -64 - C2 -3ERR 5.9 SYS_THET2
33 Fugue 69.1033% -52 - C2 -3ERR 6.0 DYHC1_MOUSE (first)
9 PsiBlast_PDB 68.3037% -62 - C2 -3ERR 6.0 DYHC1_MOUSE (first)
48 HHSearch 66.5937% -63 - C2 -3ERR 6.0 DYHC1_MOUSE (first)