@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0442: (2015-12-01 )
MTKQKIAVLGPGSWGTALAQVLNDNGHEVRLWGNVVEQIEEINTSHTNQRYFKDITLDSKIKAYTNLEEAINNVDSILFVVPTKVTRLVAKQVANLLKHKVVIMHASKGLEPGTHERLSTILEEEISEQYRSDIVVVSGPSHAEEAIVRDITLITAASKDIGAAKYVQKLFSNHYFRLYTNTDVVGVETAGALKNIIAVGAGALHGLGYGDNAKAAIITRGLAEITRLGVQLGADPLTFSGLSGVGDLIVTGTSVHSRNWRAGDALGRGEKLEDIEKNMGMVIEGISTTKVAYEIAQNLNVYMPITEAIYKSIYEGANIKDSILDMMSNEFRSENEWH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1Z82)
?
[Raw transfer]




NDP_A_3(1Z82)
?
[Raw transfer]




G3P_B_6(1Z82)
?
[Raw transfer]




59 Fugue 92.3835% -87 - C1 -1EVY - GPDA_LEIME -
2 PsiBlast_PDB 92.3235% -88 - C1 -1EVY - GPDA_LEIME -
39 HHSearch 92.0735% -86 - C1 -1EVY - GPDA_LEIME -
7 PsiBlast_PDB 92.0535% -81 - C1 -1N1E - GPDA_LEIME -
21 PsiBlast_CBE 91.9835% -82 - C1 -1N1E - GPDA_LEIME -
41 HHSearch 91.7735% -81 - C1 -3K96 - GPDA_COXBU -
6 PsiBlast_PDB 91.7735% -84 - C1 -1M67 - GPDA_LEIME -
5 PsiBlast_PDB 91.5235% -82 - C1 -1M66 - GPDA_LEIME -
4 PsiBlast_PDB 91.0035% -86 - C1 -1JDJ - GPDA_LEIME -
3 PsiBlast_PDB 90.9935% -84 - C1 -1EVZ - GPDA_LEIME -
8 PsiBlast_PDB 90.6135% -82 - C1 -1N1G - GPDA_LEIME -
9 PsiBlast_PDB 90.1535% -78 - C1 -3K96 - GPDA_COXBU -
22 PsiBlast_CBE 89.9135% -79 - C1 -3K96 - GPDA_COXBU -
1 PsiBlast_PDB 89.8040% -76 - C1 -1Z82 11.3 ?
42 HHSearch 89.7642% -77 * C1 *1Z82 10.9 ?
10 PsiBlast_PDB 88.4130% -87 - C1 -1X0X - GPDA_HUMAN -
11 PsiBlast_PDB 88.0030% -84 - C1 -1WPQ - GPDA_HUMAN -
15 PsiBlast_PDB 87.3929% -93 - C1 -4FGW - GPD1_YEAST -
43 HHSearch 86.2530% -82 - C1 -1X0V - GPDA_HUMAN -
13 PsiBlast_PDB 86.0429% -80 - C1 -2PLA - GPD1L_HUMAN -