@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0505: (2015-12-01 )
MSKKTDTPDYKPSIYSLTRDELIAWAIEHGEKKFRASQIWDWLYKKRVQSFDEMTNISKDFIALLNENFVVNPLKQRIVQESADGTVKYLFELPDGMLIETVLMRQYYGLSVCVTTQVGCNIGCTFCASGLIKKQRDLNNGEITAQIMLVQKYFDERGQGERVSHIVVMGIGEPFDNYTNVLKFLRTVNDDNGLAIGARHITVSTSGLAHKIREFANEGVQVNLAVSLHAPNNELRSSIMRINRSFPLEKLFAAIEYYIETTNRRVTFEYIMLNGVNDTPENAQELADLTKKIRKLSYVNLIPYNPVSEHDQYSRSPKERVEAFYDVLKKNGVNCVVRQEHGTDIDAACGQLRSNTMKRDRQKAKVGR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_4(3RFA)
RLMN_ECOLI
[Raw transfer]




SAM_A_5(4PL1)
?
[Raw transfer]




SAM_B_3(4PL1)
?
[Raw transfer]




SF4_A_3(3RFA)
RLMN_ECOLI
[Raw transfer]




SF4_A_6(4PL1)
?
[Raw transfer]




21 PsiBlast_CBE 98.7636%-115 - C4 -3RF9 - RLMN_ECOLI -
1 PsiBlast_PDB 98.2936%-115 - C4 -3RF9 - RLMN_ECOLI -
3 PsiBlast_PDB 96.9335%-105 - C4 -4PL1 7.0 ?
2 PsiBlast_PDB 95.6336%-118 - C4 -3RFA 6.6 RLMN_ECOLI
22 PsiBlast_CBE 94.8835%-119 - C4 -4PL1 7.0 ?
40 Fugue 93.4835%-116 - C4 -3RFA 6.6 RLMN_ECOLI
23 HHSearch 92.6236%-110 - C4 -3RFA 6.5 RLMN_ECOLI
42 Fugue 58.9118% -92 - C4 -3C8F - PFLA_ECOLI -
5 PsiBlast_PDB 53.6419% -82 - C4 -3CB8 - PFLA_ECOLI -
4 PsiBlast_PDB 52.9619% -80 - C4 -3C8F - PFLA_ECOLI -
43 Fugue 51.6214% -61 - C4 -2YX0 - TYW1_PYRHO -
31 HHSearch 51.0415% -76 - C4 -1OLT - HEMN_ECOLI -
25 HHSearch 50.8815% -77 * C4 *2YX0 - TYW1_PYRHO -
26 HHSearch 50.2520% -97 - C4 -1TV8 - MOAA_STAA8 -
30 HHSearch 49.8616% -88 - C4 -3T7V - PYLB_METBF -
27 HHSearch 49.3915% -72 - C4 -2Z2U - TYW1_METJA -
24 HHSearch 49.0414% -54 - C4 -2A5H - KAMA_CLOSU -
45 Fugue 45.7317% -51 - C5 -4O2X - MALE_ECOLI -
33 HHSearch 45.3813% -77 - C4 -1R30 - BIOB_ECOLI -
48 Fugue 44.6016% -37 * C5 *4R6H - MSME_BACSU -