@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0508: (2015-12-01 )
MKSNQWQVFKRLISYLRPYKWFTVLALSLLLLTTVVKNIIPLIASHFIDHYLTNVNQTAVLILVGYYSMYVLQTLIQYFGNLFFARVSYSIVRDIRRDAFANMERLGMSYFDRTPAGSIVSRITNDTEAISDMFSGILSSFISAIFIFTVTLYTMLMLDIKLTGLVALLLPVIFILVNVYRKKSVTVIAKTRSLLSDINSKLSESIEGIRIVQAFGQEERLKTEFEEINKEHVVYANRSMALDSLFLRPAMSLLKLLAYAVLMSYFGFTGVKGGLTAGLMYAFIQYVNRLFDPLIEVTQNFSTLQTSMVSAGRVFDLIDETGFEPSQKNTEAFVREGNIEFKNVSFSYDGKKQILDNVSFSVKKGETIAFVGATGSGKSSIINVFMRFYEFQSGQVLLDGKDIRDYSQEQLRKNIGLVLQDPFLYHGTIKSNIKMYQDITDQEVQDAAEFVDADQFIQKLPDKYDSAVSERGSSFSTGQRQLLAFARTVASKPKILILDEATANIDSETEQIVQDSLAKMRQGRTTIAIAHRLSTIQDANCIYVLDRGKIIESGNHESLLDQKGTYYRMYQLQAGMMEV

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




ATP_C_9(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_A_7(1MV5)

[Raw transfer]




4 PsiBlast_PDB 91.2632%-121 - C1 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 90.8032%-125 - C1 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 90.2132%-123 - C1 -4Q4A - Y288_THEMA -
1 PsiBlast_PDB 90.1332%-122 - C1 -4Q4J - Y288_THEMA -
5 PsiBlast_PDB 89.5232%-108 - C1 -2HYD 4.5 Y1866_STAAM
6 PsiBlast_PDB 89.4932%-110 - C1 -2ONJ - Y1866_STAAM -
21 PsiBlast_CBE 88.3132%-110 - C1 -2ONJ 6.0 Y1866_STAAM
22 PsiBlast_CBE 88.0132%-109 - C1 -2HYD 4.4 Y1866_STAAM
93 HHSearch 85.4628%-106 - C1 -3WMG - ? -
91 HHSearch 83.7328%-101 - C1 -3B60 - MSBA_SALTY -
80 Fugue 82.9828%-100 - C1 -3B60 - MSBA_SALTY -
12 PsiBlast_PDB 81.6028%-105 - C1 -3B60 - MSBA_SALTY -
92 HHSearch 78.9329%-101 - C1 -3ZDQ - ABCBA_HUMAN -
18 PsiBlast_PDB 77.9529%-102 - C1 -4AYW 5.2 ABCBA_HUMAN
16 PsiBlast_PDB 77.8429% -97 - C1 -4AYX 5.3 ABCBA_HUMAN
25 PsiBlast_CBE 77.8332%-100 - C1 -3WMG - ? -
15 PsiBlast_PDB 76.1329% -95 - C1 -4AYT - ABCBA_HUMAN -
17 PsiBlast_PDB 75.6029% -96 - C1 -3ZDQ - ABCBA_HUMAN -
7 PsiBlast_PDB 72.7832%-107 - C1 -4A82 - Y1866_STAAM -
13 PsiBlast_PDB 72.1131%-105 - C1 -4RY2 - ? -
57 PsiBlast_CBE 57.6941% -93 - C1 -1XEF 6.9 HLYBP_ECOLX
58 PsiBlast_CBE 57.4541% -92 - C1 -1XEF 6.6 HLYBP_ECOLX
56 PsiBlast_CBE 57.4041% -96 - C1 -1XEF 7.1 HLYBP_ECOLX
39 PsiBlast_CBE 57.0042% -94 - C1 -2PMK 7.1
41 PsiBlast_CBE 56.3341% -92 - C1 -2FGK 7.0
43 PsiBlast_CBE 55.9241% -92 - C1 -2FGK 6.7 HLYBP_ECOLX
53 PsiBlast_CBE 55.8341% -91 - C1 -2FGJ 6.7 HLYBP_ECOLX
55 PsiBlast_CBE 55.5441% -90 - C1 -1XEF 6.8
52 PsiBlast_CBE 55.1741% -88 - C1 -2FGJ 7.0 HLYBP_ECOLX
51 PsiBlast_CBE 54.9341% -88 - C1 -2FGJ 6.5 HLYBP_ECOLX
44 PsiBlast_CBE 54.4341% -89 - C1 -2FGK 7.5 HLYBP_ECOLX
50 PsiBlast_CBE 54.1741% -91 - C1 -2FGJ 6.4
42 PsiBlast_CBE 54.0041% -88 - C1 -2FGK 6.1 HLYBP_ECOLX
30 PsiBlast_CBE 53.3344% -79 - C1 -3NH9 6.6
98 HHSearch 53.0034% -79 * C1 *2IXE 7.1 TAP1_RAT
28 PsiBlast_CBE 52.9944% -81 - C1 -3NHB 6.6
66 PsiBlast_CBE 52.7933% -83 - C1 -2IXF 7.3
71 PsiBlast_CBE 52.1933% -81 - C1 -2IXE 6.9 TAP1_RAT
29 PsiBlast_CBE 52.0044% -82 - C1 -3NHA 6.8
69 PsiBlast_CBE 51.5433% -81 - C1 -2IXF 6.9 TAP1_RAT
68 PsiBlast_CBE 50.5433% -82 - C1 -2IXF 7.3 TAP1_RAT
48 PsiBlast_CBE 49.4142% -73 - C1 -1MV5 3.9 LMRA_LACLA
47 PsiBlast_CBE 49.2342% -80 - C1 -1MV5 6.1 LMRA_LACLA
99 HHSearch 48.1541% -83 - C1 -1MV5 5.0 LMRA_LACLA
46 PsiBlast_CBE 45.0142% -76 - C1 -1MV5 3.1
49 PsiBlast_CBE 44.8442% -73 - C1 -1MV5 5.0 LMRA_LACLA