@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0544: (2015-12-01 )
MVTIEKIDEAIHRYYKQTHSVVSPDLIKAILYSVDGGGKRIRPRILLEILEGFGVELIDGHYDVAAALEMIHTGSLIHDDLPAMDNDDFRRGRLTNHKKFDEATAVLAGDSLFLDPFDLVVKAGFKADVTVRLIELLSMSAGSFGMVGGQMLDMKGENKVLSIDDLSLIHINKTGRLLAYPFVAAGILAEKSEEVKGKLHQAGLLIGHAFQVRDDILDVTASFEELGKTPNKDIVAEKTTYPNLLGLDKSQEILDDTLKKAQAIFQNLEKKANFNARKIIDIIEGLRLNG

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]




DST_D_6(3OAC)
?
[Raw transfer]




IPE_A_4(4LLT)
?
[Raw transfer]




GPP_D_9(3KRP)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




GST_A_4(4LLS)
?
[Raw transfer]




IPE_B_7(3OYR)
?
[Raw transfer]




IPE_B_9(4LLT)
?
[Raw transfer]




DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]




DST_D_11(3KRF)
?
[Raw transfer]




GST_B_9(4LLS)
?
[Raw transfer]




IPE_C_18(3Q1O)
?
[Raw transfer]




IPE_D_24(3Q1O)
?
[Raw transfer]




DST_D_11(3KRO)
?
[Raw transfer]




IPE_A_7(3Q1O)
?
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




IPE_B_13(3Q1O)
?
[Raw transfer]




IPE_B_7(4LFE)
?
[Raw transfer]




IPE_A_3(4LFE)
?
[Raw transfer]




IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]




GOL_C_16(3M9U)
?
[Raw transfer]




IPE_A_5(3PDE)
?
[Raw transfer]




IPE_A_4(4LFG)
?
[Raw transfer]




IPE_B_9(4LFG)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




IPE_B_13(3PDE)
?
[Raw transfer]




IPE_D_19(3PDE)
?
[Raw transfer]




IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_C_15(3PDE)
?
[Raw transfer]




PPV_A_3(3NPK)
?
[Raw transfer]




IPE_A_4(3WJO)
?
[Raw transfer]




1 PsiBlast_PDB 94.1457% -95 - C1 -4LFE 3.2 ?
2 PsiBlast_PDB 92.1657% -83 - C1 -4LFG 5.4 ?
21 PsiBlast_CBE 92.0857% -83 - C1 -4LFG 5.2 ?
22 PsiBlast_CBE 91.1557% -82 - C1 -4LFE 5.1 ?
85 HHSearch 80.5941% -91 - C1 -3P8L - ? -
3 PsiBlast_PDB 75.8643% -91 - C1 -3P8L - ? -
81 HHSearch 74.4638% -97 - C1 -1RTR - ? -
12 PsiBlast_PDB 71.9239% -81 - C1 -3NPK 3.5 ?
77 HHSearch 69.9639% -73 * C1 *3PDE 3.3 ?
84 HHSearch 69.2437% -77 - C1 -3LSN - ? -
88 HHSearch 66.8938% -80 - C1 -3NPK - ? -
4 PsiBlast_PDB 65.7641% -83 - C1 -1RTR - ? -
79 HHSearch 65.5638% -78 - C1 -3TS7 - ? -
78 HHSearch 64.9136% -74 - C1 -2H8O - ? -
14 PsiBlast_PDB 64.5042% -83 - C1 -3PDE 5.0 ?
46 PsiBlast_CBE 64.1536% -65 - C1 -1RQJ 4.9 ISPA_ECOLI
30 PsiBlast_CBE 64.0042% -83 - C1 -3PDE 5.1 ?
49 PsiBlast_CBE 63.9836% -66 - C1 -1RQI 3.4 ISPA_ECOLI
44 PsiBlast_CBE 63.7736% -81 - C1 -2FOR - ? -
13 PsiBlast_PDB 63.7442% -81 - C1 -3M9U - ? -
47 PsiBlast_CBE 63.6736% -66 - C1 -1RQJ 5.5 ISPA_ECOLI
33 PsiBlast_CBE 63.5142% -85 - C1 -3M9U 2.3 ?
31 PsiBlast_CBE 62.8142% -83 - C1 -3PDE 3.4 ?
92 HHSearch 62.7339% -77 - C1 -2J1P 7.7 GGPPS_SINAL
48 PsiBlast_CBE 62.4836% -66 - C1 -1RQI 3.9 ISPA_ECOLI
82 HHSearch 61.5136% -63 - C1 -1RQJ 5.5 ISPA_ECOLI
32 PsiBlast_CBE 60.3042% -81 - C1 -3PDE 3.2 ?
42 PsiBlast_CBE 58.6836% -43 - C1 -4LLS 5.2 ?
18 PsiBlast_PDB 58.1436% -43 - C1 -4LLS 5.6 ?
41 PsiBlast_CBE 57.8436% -43 - C1 -4LLT 3.4 ?
19 PsiBlast_PDB 56.6636% -42 - C1 -4LLT 3.8 ?
25 PsiBlast_CBE 56.2045% -79 - C1 -3KRP 4.7 ?
24 PsiBlast_CBE 53.2845% -63 - C1 -3OAB 2.8 ?
26 PsiBlast_CBE 52.3045% -64 - C1 -3KRO 3.0 ?
23 PsiBlast_CBE 50.3545% -63 - C1 -3OAC 2.9 ?
27 PsiBlast_CBE 49.7945% -64 - C1 -3KRF 2.9 ?
36 PsiBlast_CBE 49.1639% -61 - C1 -3Q1O 3.9 ?
16 PsiBlast_PDB 48.8239% -60 - C1 -3Q1O 4.1 ?
35 PsiBlast_CBE 47.6739% -56 - C1 -3Q1O 3.9 ?
37 PsiBlast_CBE 47.5639% -59 - C1 -3Q1O 3.9 ?
60 PsiBlast_CBE 40.4931% -64 - C1 -3WJO 2.5 ?
64 PsiBlast_CBE 39.3731% -47 - C1 -3OYR 3.4 ?