@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0571: (2015-12-02 )
MTYLSERVLNMEESVTLAAGAKARELRVQGRDILSLTLGEPDFATPKNIQQAAIEAITDGRASFYTPSSGLPELKSAINAYFERFYGYSLKPNQVVVGTGAKFILYTFFMTVLNPGDEVIIPTPYWVSYADQIKMAEGKPVFVTAKEVNHFKVTVEQLEAVRTDKTKVILLNSPSNPTGMIYKAEELEAIGNWAVEHDILILADDIYGRLVYNGNIFTPISSLSESIRNQTIVINGVSKTYAMTGWRVGFAVGNHDIIAAMSKVVSQTTSNLTAVSQYATIEALNGSQESFEKMRLAFEERLNIIYPLLCQVPGFEVVKPQGAFYLFPNVTKAMEMKGYTDVTAFTDAILEEVGLALVTGAGFGAPENVRLSYATDLETLKEAVRRLHVFMGSNEIN

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



GOL_A_8(3E2Y)
KAT3_MOUSE
[Raw transfer]



PLP_E_5(1GDE)
?
[Raw transfer]



PLP_F_6(1GDE)
?
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_B_4(1GD9)
?
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_3(1J32)
?
[Raw transfer]



PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]



PLP_B_4(1J32)
?
[Raw transfer]



PLP_A_3(1DJU)
?
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]
50 HHSearch 93.6840%-104 * C1 *1B5P 4.8 AAT_THET8
49 HHSearch 91.2640%-103 - C1 -1J32 4.8 ?
3 PsiBlast_PDB 90.9839%-101 - C1 -1B5O 4.9 AAT_THET8
39 PsiBlast_CBE 90.3238%-108 - C1 -5BJ3 - AAT_THET8 -
10 PsiBlast_PDB 90.2338%-108 - C1 -5BJ3 - AAT_THET8 -
2 PsiBlast_PDB 90.2039%-102 - C1 -1BKG - AAT_THET8 -
9 PsiBlast_PDB 90.0638%-106 - C1 -5BJ4 5.1 AAT_THET8
28 PsiBlast_CBE 90.0538%-108 - C1 -5BJ4 5.0 AAT_THET8
41 PsiBlast_CBE 89.7738%-108 - C1 -5BJ3 - AAT_THET8 -
43 PsiBlast_CBE 89.6538%-106 - C1 -1O4S 4.5 AAT_THEMA
24 PsiBlast_CBE 89.6439%-103 - C1 -1BKG - AAT_THET8 -
40 PsiBlast_CBE 89.4838%-108 - C1 -5BJ3 - AAT_THET8 -
30 PsiBlast_CBE 89.4338%-105 - C1 -1GC4 - AAT_THET8 -
23 PsiBlast_CBE 89.2039%-103 - C1 -1BKG - AAT_THET8 -
6 PsiBlast_PDB 89.0838%-102 - C1 -1B5P 4.8 AAT_THET8
1 PsiBlast_PDB 89.0639%-102 - C1 -1J32 - ? -
26 PsiBlast_CBE 89.0138%-102 - C1 -1GCK 6.5 AAT_THET8
25 PsiBlast_CBE 88.9939%-102 - C1 -1B5O 5.3 AAT_THET8
22 PsiBlast_CBE 88.9939%-102 - C1 -1BKG - AAT_THET8 -
21 PsiBlast_CBE 88.8139%-103 - C1 -1J32 5.3 ?
11 PsiBlast_PDB 88.6938%-105 - C1 -1O4S 4.8 AAT_THEMA
27 PsiBlast_CBE 88.6338%-102 - C1 -1B5P 4.8 AAT_THET8
5 PsiBlast_PDB 88.1138%-102 - C1 -1GCK 5.5 AAT_THET8
51 HHSearch 84.9739%-102 - C1 -1O4S 4.8 AAT_THEMA
52 HHSearch 84.5736%-103 - C1 -1GD9 3.7 ?
12 PsiBlast_PDB 84.5036%-111 - C1 -1DJU 3.6 ?
45 PsiBlast_CBE 82.7636%-107 - C1 -1GD9 3.8 ?
13 PsiBlast_PDB 82.3736%-106 - C1 -1GDE 4.1 ?
14 PsiBlast_PDB 81.2436%-107 - C1 -1GD9 3.7 ?
44 PsiBlast_CBE 80.2336%-105 - C1 -1GDE 4.2 ?