@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0610: (2015-12-02 )
MKLLTNANTLKGTIRVPGDKSISHRAIIFGSISQGVTRIVDVLRGEDVLSTIEAFKQMGVLIEDDGEIITIYGKGFAGLTQPNNLLDMGNSGTSMRLIAGVLAGQEFEVTMVGDNSLSKRPMDRIALPLSKMGARISGVTNRDLPPLKLQGTKKLKPIFYHLPVASAQVKSALIFAALQTKGESLIVEKEQTRNHTEDMIRQFGGHLDIKDKEIRLNGGQSLVGQDIRVPGDISSAAFWIVVGLIIPNSHIILENVGINETRTGILDVVSKMGGKIKLSSVDNQVKSATLTVDYSHLQATHISGAMIPRLIDELPIIALLATQAQGTTVIADAQELKVKETDRIQVVVESLKQMGADITATADGMIIRGNTPLHAASLDCHGDHRIGMMIAIAALLVKEGEVDLSGEEAINTSYPNFLEHLEGLVNA

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GG9_A_2(2PQD)
AROA_AGRSC
[Raw transfer]



GG9_A_2(2PQB)
AROA_AGRSC
[Raw transfer]



RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]



RC1_A_2(2PQC)
AROA_AGRSC
[Raw transfer]



S3P_A_4(2GG6)
AROA_AGRSC
[Raw transfer]



S3P_A_2(2GGA)
AROA_AGRSC
[Raw transfer]



S3P_A_2(2GGD)
AROA_AGRSC
[Raw transfer]



S3P_A_2(4ZND)
AROA_COXBU
[Raw transfer]



GPJ_A_3(2GGA)
AROA_AGRSC
[Raw transfer]



GPJ_A_3(2GGD)
AROA_AGRSC
[Raw transfer]



FMT_A_3(2QFQ)
AROA_ECOLI
[Raw transfer]



FMT_A_4(2QFQ)
AROA_ECOLI
[Raw transfer]
2 PsiBlast_PDB 97.9067%-120 - C8 -1RF5 - AROA_STRPN -
4 PsiBlast_PDB 96.5162%-117 - C8 -4N3P - ? -
3 PsiBlast_PDB 96.0567%-112 - C8 -1RF6 - AROA_STRPN -
23 PsiBlast_CBE 95.9167%-110 - C8 -1RF6 - AROA_STRPN -
22 PsiBlast_CBE 95.8467%-109 - C8 -1RF6 - AROA_STRPN -
60 HHSearch 95.6167%-111 - C8 -1RF6 - AROA_STRPN -
26 PsiBlast_CBE 95.5567%-110 - C8 -1RF4 - AROA_STRPN -
24 PsiBlast_CBE 95.4467%-111 - C8 -1RF4 - AROA_STRPN -
21 PsiBlast_CBE 95.3767%-108 - C8 -1RF6 - AROA_STRPN -
25 PsiBlast_CBE 95.2867%-111 - C8 -1RF4 - AROA_STRPN -
1 PsiBlast_PDB 95.0867%-110 - C8 -1RF4 - AROA_STRPN -
63 HHSearch 88.2551%-112 - C8 -3RMT - AROA1_BACHD -
29 PsiBlast_CBE 88.1050%-112 - C8 -3RMT - AROA1_BACHD -
5 PsiBlast_PDB 87.0150%-110 - C8 -3RMT - AROA1_BACHD -
27 PsiBlast_CBE 85.6850%-107 - C8 -3RMT - AROA1_BACHD -
28 PsiBlast_CBE 85.6550%-108 - C8 -3RMT - AROA1_BACHD -
6 PsiBlast_PDB 85.4943%-112 - C8 -3ROI - AROA_COXBU -
38 PsiBlast_CBE 84.6843%-113 - C8 -3ROI - AROA_COXBU -
62 HHSearch 84.4942% -96 * C8 *3SLH - AROA_COXBU -
8 PsiBlast_PDB 83.7543%-102 - C8 -4EGR - AROA_COXBU -
9 PsiBlast_PDB 83.3243% -98 - C8 -4ZND 4.3 AROA_COXBU
13 PsiBlast_PDB 81.0839% -96 - C8 -2PQB 9.4 AROA_AGRSC
17 PsiBlast_PDB 81.0439% -97 - C8 -2GGA 5.1 AROA_AGRSC
16 PsiBlast_PDB 80.7639% -97 - C8 -2GG6 4.5 AROA_AGRSC
61 HHSearch 80.2439% -97 - C8 -2PQC 6.9 AROA_AGRSC
14 PsiBlast_PDB 80.1839% -96 - C8 -2PQC 6.9 AROA_AGRSC
11 PsiBlast_PDB 80.0239% -96 - C8 -2PQD 9.1 AROA_AGRSC
12 PsiBlast_PDB 79.9339% -94 - C8 -2GGD 5.0 AROA_AGRSC