@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0673: (2015-12-02 )
MLNQLKNNYFFAVIRGKSSEDALEIAKHAILGGIRNIEVTFSTPEASKVIKQLSDDFKNNKKIIVGAGTVMTTQLAKDAIDAGAKFLVSPHFDSDIANLANENKVYYFPGCATATEIVVARKYKCQIIKLFPGGVVGPDFIKDIHGPIPDVDLMPSGGVSVSNVAEWRKAGAVAVGVGSALSSKVATEGYDSVTKIAKQFVSALD

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CIT_D_4(1FQ0)
ALKH_ECOLI
[Raw transfer]




CIT_E_5(1FQ0)
ALKH_ECOLI
[Raw transfer]




CIT_D_4(1FQ0)
ALKH_ECOLI
[Raw transfer]




CIT_F_6(1FQ0)
ALKH_ECOLI
[Raw transfer]




PYR_C_11(1EUA)
ALKH_ECOLI
[Raw transfer]




CIT_D_4(1FWR)
ALKH_ECOLI
[Raw transfer]




CIT_E_5(1FWR)
ALKH_ECOLI
[Raw transfer]




PYR_A_9(1EUA)
ALKH_ECOLI
[Raw transfer]




PYR_C_15(1WA3)
?
[Raw transfer]




PYR_E_17(1WA3)
?
[Raw transfer]




PYR_B_14(1WA3)
?
[Raw transfer]




PYR_D_16(1WA3)
?
[Raw transfer]




PYR_B_10(1EUA)
ALKH_ECOLI
[Raw transfer]




PYR_F_18(1WA3)
?
[Raw transfer]




CIT_F_6(1FWR)
ALKH_ECOLI
[Raw transfer]




PYR_A_3(3VCR)
?
[Raw transfer]




PYR_A_3(3VCR)
?
[Raw transfer]




22 PsiBlast_CBE 97.7845%-132 - C2 -1WA3 2.9 ?
1 PsiBlast_PDB 97.7345%-128 - C2 -1WA3 - ? -
2 PsiBlast_PDB 97.4445%-129 - C2 -1VLW - ? -
23 PsiBlast_CBE 97.2745%-128 - C2 -1WA3 2.9 ?
21 PsiBlast_CBE 97.1045%-131 - C2 -1WA3 3.0 ?
24 PsiBlast_CBE 97.0845%-130 - C2 -1WA3 3.0 ?
25 PsiBlast_CBE 96.6545%-127 - C2 -1WA3 2.9 ?
48 HHSearch 91.1447%-123 - C2 -1WA3 - ? -
14 PsiBlast_PDB 86.9127%-114 - C2 -4E38 - ? -
61 Fugue 84.5631%-119 * C2 *1FQ0 4.6 ALKH_ECOLI
44 HHSearch 83.2831%-114 - C2 -1WBH - ALKH_ECOLI -
42 HHSearch 82.4227%-110 - C2 -1MXS - ALKD_PSEPU -
62 Fugue 82.1029%-110 - C2 -4QCC - DGOA_ECOLI -
45 HHSearch 81.2227%-122 - C2 -2YW3 - ? -
30 PsiBlast_CBE 80.7832%-118 - C2 -1EUA 2.8 ALKH_ECOLI
5 PsiBlast_PDB 80.7629%-115 - C2 -2V82 - DGOA_ECOLI -
49 HHSearch 80.5229%-108 - C2 -2V82 - DGOA_ECOLI -
3 PsiBlast_PDB 80.4629%-115 - C2 -4QCC - DGOA_ECOLI -
31 PsiBlast_CBE 80.0132%-112 - C2 -1EUA 3.1 ALKH_ECOLI
46 HHSearch 79.8732%-108 - C2 -3VCR 3.3 ?
33 PsiBlast_CBE 79.7432%-113 - C2 -1FWR 2.8 ALKH_ECOLI
26 PsiBlast_CBE 79.3332%-113 - C2 -1FQ0 4.2 ALKH_ECOLI
32 PsiBlast_CBE 78.6532%-114 - C2 -1FWR 3.0 ALKH_ECOLI
27 PsiBlast_CBE 78.4332%-112 - C2 -1FQ0 4.4 ALKH_ECOLI
10 PsiBlast_PDB 78.3832%-112 - C2 -1FWR 2.6 ALKH_ECOLI
7 PsiBlast_PDB 78.3632%-114 - C2 -1FQ0 3.0 ALKH_ECOLI
8 PsiBlast_PDB 78.0932%-112 - C2 -1EUA 2.8 ALKH_ECOLI
6 PsiBlast_PDB 77.1934%-107 - C2 -3VCR 3.3 ?