@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0797: (2015-12-03 )
MKFTELNLSQDILSAVEKAGFVEPSPIQEMTIPLALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGRDKGVKVRSVYGGSSIEKQIKALRSGAHVVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEAIISRVPETRQTLLFSATMPDPIKRIGVKFMKDPEHVKIKATELTNVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLTIIENLTKKRMTGMKPATASEAFQAKKKVALKRIARDFEDQELVSKFDKFKADALELATQYTPEELALYVLSLTVQDPESLPEVEITREKPLPFKPSGGGFKGKGGRGNGRGGDRRRNDRGDRRGNRDRDDRGGRCDFKRRDDKFKKDNRRQENKKPHKNTSSEKQTGFVIRNKGDK

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

8OD_B_7(3NBF)
?
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_4(3FE2)
DDX5_HUMAN
[Raw transfer]




ANP_A_3(3B7G)
DDX20_HUMAN
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_B_8(3FE2)
DDX5_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




AMP_B_5(3IUY)
DDX53_HUMAN
[Raw transfer]




ADP_A_3(2OXC)
DDX20_HUMAN
[Raw transfer]




ADP_A_3(2PL3)
DDX10_HUMAN
[Raw transfer]




ADP_B_4(2OXC)
DDX20_HUMAN
[Raw transfer]




ANP_B_4(3B7G)
DDX20_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




AMP_A_3(3BER)
DDX47_HUMAN
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




8OP_D_12(3NBF)
?
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




FLC_D_4(1T6N)
DX39B_HUMAN
[Raw transfer]




FLC_C_3(1T6N)
DX39B_HUMAN
[Raw transfer]




113 HHSearch 90.3639% -94 - C6 -2I4I - DDX3X_HUMAN -
1 PsiBlast_PDB 90.0646% -98 - C6 -1HV8 - H669_METJA -
111 HHSearch 89.7246% -93 - C6 -1HV8 - H669_METJA -
3 PsiBlast_PDB 88.5540% -86 - C6 -2J0S 9.1 IF4A3_HUMAN
4 PsiBlast_PDB 88.3540% -83 - C6 -2XB2 - IF4A3_HUMAN -
5 PsiBlast_PDB 88.2640% -84 - C6 -2HYI - IF4A3_HUMAN -
15 PsiBlast_PDB 87.9141%-102 - C6 -2VSO - IF4A_YEAST -
31 PsiBlast_CBE 87.8641%-104 - C6 -2VSO - IF4A_YEAST -
2 PsiBlast_PDB 87.6940% -83 - C6 -2J0Q - IF4A3_HUMAN -
6 PsiBlast_PDB 87.6540% -84 - C6 -3EX7 - IF4A3_HUMAN -
30 PsiBlast_CBE 87.6041% -99 - C6 -2VSX - IF4A_YEAST -
21 PsiBlast_CBE 87.5540% -83 - C6 -2J0Q - IF4A3_HUMAN -
16 PsiBlast_PDB 87.5441% -99 - C6 -2VSX - IF4A_YEAST -
20 PsiBlast_PDB 87.4638% -98 - C6 -2I4I - DDX3X_HUMAN -
24 PsiBlast_CBE 87.4340% -81 - C6 -2HYI - IF4A3_HUMAN -
29 PsiBlast_CBE 87.1043%-104 - C6 -4KBF - ? -
23 PsiBlast_CBE 87.0140% -84 - C6 -3EX7 - IF4A3_HUMAN -
105 HHSearch 86.8440% -76 - C6 -2DB3 - VASA1_DROME -
33 PsiBlast_CBE 86.7237% -91 - C6 -4CT4 - DDX6_HUMAN -
28 PsiBlast_CBE 86.4343% -98 - C6 -4KBG - ? -
34 PsiBlast_CBE 85.6536% -76 - C6 -4D26 5.1 ?
35 PsiBlast_CBE 85.5136% -78 - C6 -4D25 8.1 ?
46 PsiBlast_CBE 81.5134% -85 - C6 -3FHT 9.1 DD19B_HUMAN
47 PsiBlast_CBE 80.8834% -84 - C6 -3FHT 8.4 DD19B_HUMAN
107 HHSearch 80.6433% -85 - C6 -3FHT 8.4 DD19B_HUMAN
45 PsiBlast_CBE 80.2134% -82 - C6 -3G0H 7.9 DD19B_HUMAN
48 PsiBlast_CBE 80.0734% -89 - C6 -3EWS 6.6 DD19B_HUMAN
57 PsiBlast_CBE 67.4346%-108 - C6 -3MWL 3.6 ?
52 PsiBlast_CBE 67.3647%-102 - C6 -2GXQ 6.0 ?
53 PsiBlast_CBE 67.1246%-108 - C6 -3NBF 3.3 ?
56 PsiBlast_CBE 66.8646%-101 - C6 -3NBF 4.1 ?
51 PsiBlast_CBE 66.8047%-100 - C6 -2GXS 5.8 ?
59 PsiBlast_CBE 66.2346%-101 - C6 -3MWK 4.1 ?
54 PsiBlast_CBE 66.0746%-102 - C6 -3NBF 4.4 ?
50 PsiBlast_CBE 65.9047%-100 - C6 -2GXS 4.8 ?
55 PsiBlast_CBE 65.8246% -95 - C6 -3NBF 5.4 ?
71 PsiBlast_CBE 65.4640% -99 - C6 -1T6N 2.9 DX39B_HUMAN
72 PsiBlast_CBE 64.9940% -97 - C6 -1T6N 2.5 DX39B_HUMAN
75 PsiBlast_CBE 64.4037%-102 - C6 -4PX9 5.6 DDX3X_HUMAN
74 PsiBlast_CBE 64.3737%-101 - C6 -4PX9 5.1 DDX3X_HUMAN
68 PsiBlast_CBE 63.6237% -87 - C6 -3FE2 6.2 DDX5_HUMAN
69 PsiBlast_CBE 63.2337% -86 - C6 -3FE2 5.2 DDX5_HUMAN
79 PsiBlast_CBE 63.1938% -99 - C6 -3B7G 6.1 DDX20_HUMAN
81 PsiBlast_CBE 62.8438% -97 - C6 -2OXC 6.3 DDX20_HUMAN
80 PsiBlast_CBE 62.5538% -96 - C6 -3B7G 6.0 DDX20_HUMAN
82 PsiBlast_CBE 62.5138% -94 - C6 -2OXC 7.1 DDX20_HUMAN
73 PsiBlast_CBE 62.5137%-101 - C6 -4PX9 5.6 DDX3X_HUMAN
76 PsiBlast_CBE 60.2436%-101 - C6 -3IUY 5.8 DDX53_HUMAN
70 PsiBlast_CBE 59.7837% -88 - C6 -3BER 5.0 DDX47_HUMAN
78 PsiBlast_CBE 59.1837% -89 - C6 -2PL3 5.9 DDX10_HUMAN
85 PsiBlast_CBE 57.3436% -85 - C6 -3FMO 6.8 DD19B_HUMAN