@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0819: (2015-12-03 )
MRVITVKNDIEGGKIAFTLLEEKMKAGAQTLGLATGSSPITFYEEIVKSNLDFSNMVSINLDEYVGIAASNDQSYSYFMHKHLFDAKPFKENNLPNGLAKDLKEEIKRYDAVINANPIDFQILGIGRNGHIGFNEPGTPFDITTHVVDLAPSTIEANSRFFNSIDDVPKQALSMGIGSIMKSKTIVLVAYGIEKAEAIASMIKGPITEDMPASILQKHDDVVIIVDEAAASKL

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]




F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]




AGP_A_13(1HOR)
NAGB_ECOLI
[Raw transfer]




AGP_B_16(1HOR)
NAGB_ECOLI
[Raw transfer]




F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]




GLP_B_4(2RI1)
NAGB_STRMU
[Raw transfer]




GLP_A_3(2RI1)
NAGB_STRMU
[Raw transfer]




FPC_A_10(1FQO)
NAGB_ECOLI
[Raw transfer]




F6R_B_16(1FQO)
NAGB_ECOLI
[Raw transfer]




FGS_B_6(2WU1)
NAGB_ECOLI
[Raw transfer]




FGS_A_4(2WU1)
NAGB_ECOLI
[Raw transfer]




PGA_A_3(2BKV)
NAGB_BACSU
[Raw transfer]




TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]




TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]




PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]




1 PsiBlast_PDB 96.9263%-108 - C1 -2RI0 - NAGB_STRMU -
21 PsiBlast_CBE 96.3663%-108 - C1 -2RI0 - NAGB_STRMU -
22 PsiBlast_CBE 96.0063%-106 - C1 -2RI1 3.3 NAGB_STRMU
2 PsiBlast_PDB 95.3463%-107 - C1 -2RI1 3.6 NAGB_STRMU
59 HHSearch 92.0959% -99 - C1 -2RI0 - NAGB_STRMU -
24 PsiBlast_CBE 86.5843%-102 - C1 -2BKV 3.3 NAGB_BACSU
58 HHSearch 85.9644% -98 - C1 -2BKX 4.5 NAGB_BACSU
3 PsiBlast_PDB 85.3543%-100 - C1 -2BKV 2.6 NAGB_BACSU
4 PsiBlast_PDB 85.1143% -99 - C1 -2BKX 4.5 NAGB_BACSU
23 PsiBlast_CBE 84.9243% -98 - C1 -2BKX 4.6 NAGB_BACSU
32 PsiBlast_CBE 84.8633%-111 - C1 -4R7T - NAGB_VIBCH -
13 PsiBlast_PDB 84.4932%-104 - C1 -1FSF - NAGB_ECOLI -
33 PsiBlast_CBE 84.3133%-113 - C1 -4R7T - NAGB_VIBCH -
60 HHSearch 83.9436%-104 - C1 -3HN6 - NAGB_BORBU -
25 PsiBlast_CBE 83.2632%-108 - C1 -2WU1 2.6 NAGB_ECOLI
34 PsiBlast_CBE 83.2233%-112 - C1 -4R7T - NAGB_VIBCH -
8 PsiBlast_PDB 82.9932%-104 - C1 -1CD5 - NAGB_ECOLI -
31 PsiBlast_CBE 82.8432%-106 - C1 -1DEA - NAGB_ECOLI -
9 PsiBlast_PDB 82.7232%-105 - C1 -1FQO 4.6 NAGB_ECOLI
6 PsiBlast_PDB 82.6932%-104 - C1 -1DEA - NAGB_ECOLI -
30 PsiBlast_CBE 82.0632%-107 - C1 -1FQO 4.4 NAGB_ECOLI
14 PsiBlast_PDB 82.0032%-104 - C1 -2WU1 2.9 NAGB_ECOLI
57 HHSearch 81.9534%-101 - C1 -1FS5 3.4 NAGB_ECOLI
27 PsiBlast_CBE 81.8132%-102 - C1 -1HOR 5.1 NAGB_ECOLI
11 PsiBlast_PDB 81.6732%-104 - C1 -1FS5 3.4 NAGB_ECOLI
5 PsiBlast_PDB 80.8432%-103 - C1 -1HOR 4.7 NAGB_ECOLI