@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0829: (2015-12-03 )
MKELSSAQIRQMWLDFWKSKGHSVEPSANLVPVNDPTLLWINSGVATLKKYFDGSVIPENPRITNAQKSIRTNDIENVGKTARHHTMFEMLGNFSIGDYFRDEAIEWGFELLTSPEWFDFPKDKLYMTYYPDDKDSYNRWIACGVEPSHLVPIEDNFWEIGAGPSGPDTEIFFDRGEDFDPDNIGLRLLAEDIENDRYIEIWNIVLSQFNADPAVPRSEYKELPNKNIDTGAGLERLAAVMQGAKTNFETDLFMPIIREVEKLSGKTYDPDGDNMSFKVIADHIRALSFAIGDGALPGNEGRGYVLRRLLRRAVMHGRRLGINETFLYKLVPTVGQIMESYYPEVLEKRDFIEKIVKREEETFARTIDAGSGHLDSLLAQLKAEGKDTLEGKDIFKLYDTYGFPVELTEELAEDAGYKIDHEGFKSAMKEQQDRARAAVVKGGSMGMQNETLAGIVEESRFEYDTYSLESSLSVIIADNERTEAVSEGQALLVFAQTPFYAEMGGQVADTGRIKNDKGDTVAEVVDVQKAPNGQPLHTVNVLASLSVGTNYTLEINKERRLAVEKNHTATHLLHAALHNVIGEHATQAGSLNEEEFLRFDFTHFEAVSNEELRHIEQEVNEQIWNALTITTTETDVETAKEMGAMALFGEKYGKVVRVVQIGNYSVELCGGTHLNNSSEIGLFKIVKEEGIGSGTRRIIAVTGRQAFEAYRNQEDALKEIAATVKAPQLKDAAAKVQALSDSLRDLQKENVELKEKAAAAAAGDVFKDIQEAKGVRFIASQVDVADAGALRTFADNWKQKDYSDVLVLVAAIGEKVNVLVASKTKDVHAGNMIKGLAPIVAGRGGGKPDMAMAGGSDASKIAELLAAVAENL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]
33 HHSearch 94.5928% -67 * C2 *3WQY - SYA_ARCFU -
15 PsiBlast_PDB 90.0326% -56 - C2 -3WQY - SYA_ARCFU -
16 PsiBlast_PDB 88.0026% -57 - C2 -3WQZ - SYA_ARCFU -
36 HHSearch 84.8445% -63 - C2 -1YFS 2.6 SYA_AQUAE
35 HHSearch 84.7629% -57 - C2 -2ZTG - SYA_ARCFU -
2 PsiBlast_PDB 84.4446% -66 - C2 -1YFR - SYA_AQUAE -
26 PsiBlast_CBE 84.2746% -64 - C2 -3HXZ - SYA_ECOLI -
25 PsiBlast_CBE 84.1446% -63 - C2 -3HXZ - SYA_ECOLI -
4 PsiBlast_PDB 84.1246% -66 - C2 -1YFT - SYA_AQUAE -
3 PsiBlast_PDB 84.0846% -67 - C2 -1YFS - SYA_AQUAE -
37 HHSearch 83.9948% -67 - C2 -3HY0 5.7 SYA_ECOLI
13 PsiBlast_PDB 83.9846% -58 - C2 -3HY1 7.7 SYA_ECOLI
1 PsiBlast_PDB 83.9746% -68 - C2 -3HTZ - SYA_AQUAE -
6 PsiBlast_PDB 83.9346% -63 - C2 -3HXU 8.8 SYA_ECOLI
11 PsiBlast_PDB 83.8446% -63 - C2 -3HXZ - SYA_ECOLI -
24 PsiBlast_CBE 83.8246% -63 - C2 -3HY0 5.7 SYA_ECOLI
10 PsiBlast_PDB 83.7646% -65 - C2 -3HXY 8.7 SYA_ECOLI
27 PsiBlast_CBE 83.6746% -62 - C2 -3HXZ - SYA_ECOLI -
21 PsiBlast_CBE 83.6646% -66 - C2 -1YFS - SYA_AQUAE -
8 PsiBlast_PDB 83.6546% -63 - C2 -3HXW 8.7 SYA_ECOLI
9 PsiBlast_PDB 83.5446% -63 - C2 -3HXX 10.1 SYA_ECOLI
7 PsiBlast_PDB 83.5346% -64 - C2 -3HXV 5.8 SYA_ECOLI
12 PsiBlast_PDB 83.3446% -63 - C2 -3HY0 5.7 SYA_ECOLI