@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0861: (2015-12-03 )
MRKIIINGGKQLTGEVAVSGAKNSVVALIPATILADDIVVLDGVPAISDVDSLVDIMETMGAKIKRYGETLEIDPRGVKDIPMPYGKINSLRASYYFYGSLLGRYGQATVGLPGGCDLGPRPIDLHLKAFEAMGASVSYEGDSMRLATNGKPLQGANIYMDTVSVGATINTMIAAAKANGRTVIENAAREPEIIDVATLLNNMGAHIRGAGTDVITIEGVKSLHGTRHQVIPDRIEAGTYIAMAAAIGRGIKVTNVLYEHLESFIAKLDEMGVRMTVEEDSIFVEEQEKLKAVSIKTSPYPGFATDLQQPLTPLLLTAEGNGSLLDTIYEKRVNHVPELARMGANISTLGGKIVYSGPNQLSGAPVKATDLRAGAALVIAGLMAEGRTEITNIEFILRGYSNIIEKLTSLGADIQLVEE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UD1_A_6(2RL2)
MURA_HAEIN
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



UD1_D_4(1UAE)
MURA_ECOLI
[Raw transfer]



TET_D_4(1A2N)
MURA_ECOLI
[Raw transfer]



UD1_A_3(2RL1)
MURA_HAEIN
[Raw transfer]



EPU_A_3(2YVW)
MURA_AQUAE
[Raw transfer]



PEG_A_3(3ZH4)
?
[Raw transfer]



FLC_A_2(3ZH4)
?
[Raw transfer]



FLC_A_2(3ZH4)
?
[Raw transfer]



FCN_G_7(1UAE)
MURA_ECOLI
[Raw transfer]



GG6_A_5(2RL2)
MURA_HAEIN
[Raw transfer]
1 PsiBlast_PDB 98.7379%-115 - C6 -3ZH3 - ? -
32 HHSearch 97.9180%-114 - C6 -3ZH4 4.1 ?
2 PsiBlast_PDB 97.6579%-114 - C6 -3ZH4 4.1 ?
26 PsiBlast_CBE 84.8345%-105 - C6 -3VCY - MURA_VIBFM -
5 PsiBlast_PDB 84.7345%-104 - C6 -3VCY - MURA_VIBFM -
25 PsiBlast_CBE 84.7245%-103 - C6 -3VCY - MURA_VIBFM -
24 PsiBlast_CBE 84.5745%-102 - C6 -3VCY - MURA_VIBFM -
8 PsiBlast_PDB 84.4844%-108 - C6 -3SPB - MURA_ENTCC -
7 PsiBlast_PDB 84.3947%-102 - C6 -3SG1 - MURA1_BACAN -
31 PsiBlast_CBE 84.3644%-110 - C6 -1NAW - MURA_ENTCC -
33 HHSearch 84.2548%-106 - C6 -3R38 - MURA1_LISMO -
6 PsiBlast_PDB 84.2345%-100 - C6 -1UAE 7.6 MURA_ECOLI
29 PsiBlast_CBE 83.8545%-106 - C6 -5BQ2 - ? -
22 PsiBlast_CBE 83.8146%-100 - C6 -4R7U - MURA_VIBCH -
9 PsiBlast_PDB 83.6344%-108 - C6 -1NAW - MURA_ENTCC -
23 PsiBlast_CBE 83.4646%-102 - C6 -4R7U - MURA_VIBCH -
4 PsiBlast_PDB 83.3945%-105 - C6 -5BQ2 - ? -
28 PsiBlast_CBE 83.3245%-105 - C6 -5BQ2 - ? -
27 PsiBlast_CBE 83.3145%-106 - C6 -5BQ2 - ? -
10 PsiBlast_PDB 83.3147%-103 - C6 -3R38 - MURA1_LISMO -
13 PsiBlast_PDB 82.8942% -98 - C6 -2RL2 6.3 MURA_HAEIN
12 PsiBlast_PDB 82.3342% -99 - C6 -2RL1 6.9 MURA_HAEIN
14 PsiBlast_PDB 81.7938% -97 - C6 -2YVW 6.0 MURA_AQUAE
11 PsiBlast_PDB 81.4145% -99 - C6 -1A2N 8.0 MURA_ECOLI
40 HHSearch 78.6138% -99 - C6 -2YVW 6.4 MURA_AQUAE