@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0898: (2015-12-04 )
MAFDVIMPKLGVDMQEGEILEWKKNEGDTVNEGDVLLEIMSDKTNMEIEAEDTGVLLKIVHQAGDVVPVTEVIAYIGEEGEEVGTSSPSADATITAEDGQSVSGPAAPSQETVAAATPKEELAADEYDIVVVGGGPAGYYAAIRGAQLGGKIAIVEKTEFGGTCLNVGCIPTKTYLKNAEILDGLKVAAGRGINLASTNYAIDMDKTVAFKNSVVKTLTGGVRGLLKANKVEIFNGLGQVNPDKSVVIGDKVIKGRNVVLATGSKVSRINIPGIESPLVLTSDDILDLREIPKSLAVMGGGVVGIELGLVWASYGVDVTVIEMADRIIPAMDKEVSLELQKILAKKGMKIKTSVGVSEIVEANNQLTLKLNNGEEVVADKALLSIGRVPQMNGLENLEPELEMERGRIKVNAYQETSIPGIYAPGDVNGTRMLAHAAYRMGEVAAENALGGNKRKAHLDFTPAAVYTHPEVAMVGMTEEQAREQYGDILVGKNSFTGNGRAIASNEAHGFVKVIAEPKYKEILGVHIIGPAAAELINEASTIMENELTVYDVAQSIHGHPTFSEVMYEAFLDVLGEAIHNPPKRK

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




3II_B_6(3II4)
DLDH_MYCTU
[Raw transfer]




3II_A_4(3II4)
DLDH_MYCTU
[Raw transfer]




104 HHSearch 91.4243% -92 - C3 -2EQ6 13.2 ?
21 PsiBlast_CBE 91.0840% -89 - C3 -3LAD 12.3 DLDH_AZOVI
103 HHSearch 90.7042% -92 - C3 -3LAD 11.6 DLDH_AZOVI
14 PsiBlast_PDB 90.6540% -93 - C3 -1EBD - DLDH1_GEOSE -
1 PsiBlast_PDB 90.5340% -94 - C3 -3LAD - DLDH_AZOVI -
114 HHSearch 90.5040% -96 - C3 -1EBD 12.2 DLDH1_GEOSE
72 PsiBlast_CBE 89.3440% -93 - C3 -1EBD - DLDH1_GEOSE -
102 HHSearch 89.2840% -95 * C3 *3URH 12.7 ?
17 PsiBlast_PDB 88.4738% -96 - C3 -3URH - ? -
99 HHSearch 88.2740% -89 - C3 -2QAE 12.5 DLDH_TRYCR
13 PsiBlast_PDB 88.0940% -88 - C3 -1DXL - DLDH_PEA -
112 HHSearch 87.7439% -94 - C3 -2YQU 12.6 ?
100 HHSearch 87.4939% -90 - C3 -1ZMD - DLDH_HUMAN -
5 PsiBlast_PDB 87.3738% -96 - C3 -2YQU - ? -
109 HHSearch 87.3040% -92 - C3 -1DXL - DLDH_PEA -
32 PsiBlast_CBE 87.2438% -95 - C3 -2YQU 12.4 ?
26 PsiBlast_CBE 86.9539% -96 - C3 -1ZY8 - DLDH_HUMAN -
15 PsiBlast_PDB 86.9337% -92 - C3 -1JEH - DLDH_YEAST -
33 PsiBlast_CBE 86.9138% -97 - C3 -2EQ7 12.7 ?
106 HHSearch 86.7638% -90 - C3 -1V59 12.6 DLDH_YEAST
96 HHSearch 86.1035% -93 - C3 -1LVL 11.2 DLDH1_PSEPU
22 PsiBlast_CBE 86.0139% -87 - C3 -1LPF 12.2 DLDH_PSEFL
74 PsiBlast_CBE 85.6637% -94 - C3 -1JEH 12.7 DLDH_YEAST
73 PsiBlast_CBE 85.4137% -93 - C3 -1V59 12.5 DLDH_YEAST
68 PsiBlast_CBE 83.7540% -91 - C3 -2EQ6 13.1 ?
78 PsiBlast_CBE 83.2137% -94 - C3 -3II4 6.8 DLDH_MYCTU
18 PsiBlast_PDB 82.2937% -91 - C3 -3II4 7.6 DLDH_MYCTU
88 PsiBlast_CBE 80.4036% -98 - C3 -1LVL 9.0 DLDH1_PSEPU
86 PsiBlast_CBE 80.1137% -83 - C3 -2QAE 11.4 DLDH_TRYCR
87 PsiBlast_CBE 78.8337% -83 - C3 -2QAE 11.3 DLDH_TRYCR