@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0933: (2015-12-04 )
MCGIVGVVGNTNATDILIQGLEKLEYRGYDSAGIFVVGDNKSQLVKSVGRIAELQAKVGDSVSGTTGIGHTRWATHGKPTEGNAHPHTSGSGRFVLVHNGVIENYLQIKETYLTKHNLKGETDTEIAIHLVEHFVEEDNLSVLEAFKKALHIIEGSYAFALIDSQDADTIYVAKNKSPLLIGLGNGYNMVCSDAMAMIRETSEYMEIHDKELVIVKKDSVEVQDYDGNVIERGSYTAELDLSDIGKGTYPFYMLKEIDEQPTVMRKLISTYANESGDMNVDSDIIKSVQEADRLYILAAGTSYHAGFAAKTMIEKLTDTPVELGVSSEWGYNMPLLSKKPMFILLSQSGETADSRQVLVKANEMGIPSLTITNVPGSTLSREATYTMLIHAGPEIAVASTKAYTAQVATLAFLAKAVGEANGKAEAKDFDLVHELSIVAQSIEATLSEKDVISEKVEQLLISTRNAFYIGRGNDYYVTMEAALKLKEISYIQTEGFAAGELKHGTISLIEDNTPVIALISADSTIAAHTRGNIQEVVSRGANALIIVEEGLEREGDDIIVNKVHPFLSAISMVIPTQLIAYYASLQRGLDVDKPRNLAKAVTVE

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]



GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]



GLP_X_2(2VF5)
GLMS_ECOLI
[Raw transfer]



AGP_A_2(2ZJ4)
GFPT1_HUMAN
[Raw transfer]



AGP_A_6(1MOS)
GLMS_ECOLI
[Raw transfer]



G6P_A_2(1MOR)
GLMS_ECOLI
[Raw transfer]



G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]



G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]



G6Q_B_4(2J6H)
GLMS_ECOLI
[Raw transfer]



G6Q_A_3(2J6H)
GLMS_ECOLI
[Raw transfer]



BG6_B_4(2PUW)
GFA1_CANAL
[Raw transfer]



BG6_A_3(2PUW)
GFA1_CANAL
[Raw transfer]



GLP_A_2(1MOQ)
?
[Raw transfer]
2 PsiBlast_PDB 94.9337% -83 - C1 -4AMV - GLMS_ECOLI -
4 PsiBlast_PDB 94.3336% -84 - C1 -2J6H 3.5 GLMS_ECOLI
21 PsiBlast_CBE 94.3137% -84 - C1 -4AMV - GLMS_ECOLI -
22 PsiBlast_CBE 93.5937% -85 - C1 -4AMV - GLMS_ECOLI -
30 PsiBlast_CBE 93.3236% -88 - C1 -3OOJ - GLMS_ECOLI -
25 PsiBlast_CBE 92.9236% -84 - C1 -2J6H 4.3 GLMS_ECOLI
27 PsiBlast_CBE 92.8936% -90 - C1 -3OOJ - GLMS_ECOLI -
29 PsiBlast_CBE 92.8236% -86 - C1 -3OOJ - GLMS_ECOLI -
28 PsiBlast_CBE 92.2236% -89 - C1 -3OOJ - GLMS_ECOLI -
26 PsiBlast_CBE 92.0136% -85 - C1 -3OOJ - GLMS_ECOLI -
7 PsiBlast_PDB 91.5336% -85 - C1 -3OOJ - GLMS_ECOLI -
32 PsiBlast_CBE 91.5136% -85 - C1 -3OOJ - GLMS_ECOLI -
31 PsiBlast_CBE 90.9836% -85 - C1 -3OOJ - GLMS_ECOLI -
24 PsiBlast_CBE 89.2336% -81 - C1 -1JXA - GLMS_ECOLI -
3 PsiBlast_PDB 89.2036% -82 - C1 -1JXA - GLMS_ECOLI -
23 PsiBlast_CBE 87.7436% -83 - C1 -1JXA - GLMS_ECOLI -
1 PsiBlast_PDB 79.0457% -96 - C1 -4S1W - ? -
59 HHSearch 69.5837% -77 * C1 *2ZJ3 3.6 GFPT1_HUMAN
6 PsiBlast_PDB 68.2136% -76 - C1 -2VF5 3.3 GLMS_ECOLI
9 PsiBlast_PDB 67.8836% -77 - C1 -1MOQ 4.4 GLMS_ECOLI
65 HHSearch 67.7137% -78 - C1 -1MOQ 4.4 GLMS_ECOLI
8 PsiBlast_PDB 67.4636% -76 - C1 -1MOS 4.4 GLMS_ECOLI
12 PsiBlast_PDB 66.8538% -70 - C1 -2ZJ4 4.5 GFPT1_HUMAN
10 PsiBlast_PDB 66.8536% -74 - C1 -1MOR 4.2 GLMS_ECOLI
11 PsiBlast_PDB 66.7538% -71 - C1 -2ZJ3 3.6 GFPT1_HUMAN
18 PsiBlast_PDB 62.4835% -84 - C1 -2PUW 2.8 GFA1_CANAL
36 PsiBlast_CBE 61.0635% -80 - C1 -2PUW 3.1 GFA1_CANAL
55 Fugue 40.7736% -69 - C1 -1MOQ Error ?